Job Description P77376 Confidence 100.00% Date Thu Jan 5 12:28:19 GMT 2012 Rank 34 Aligned Residues 342 % Identity 15% Template c2ixaA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; PDBTitle: a-zyme, n-acetylgalactosaminidase Resolution 2.3 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.				.	.	.	.	.										50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																												.	.	.						.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.						.	.	.	.	.	.	.	.	.
Query Sequence		D	N	I	R	V	G	L	I	G	Y	G	Y	A	S	K	T	F	H	A	P	L	I	A	G	T	P	G	Q	E	L	A	V	I	S	S	S	D	E	T	K	V	K	.	.	.	A	D	W	P	T	.	.	.	.	.	.	.	.	.	V	T	V	V	S	E	P	K	H	L	F	N	D	P	N	I	D	L	I	V	I
Query Conservation																																												.	.	.						.	.	.	.	.	.	.	.	.
Alig confidence																		.																										.	.	.						.	.	.	.	.	.	.	.	.
Template Conservation																		.
Template Sequence		K	K	V	R	I	A	F	I	A	V	G	L	R	G	Q	T	.	H	V	E	N	M	A	R	R	D	D	V	E	I	V	A	F	A	D	P	D	P	Y	M	V	G	R	A	Q	E	I	L	K	K	N	G	K	K	P	A	K	V	F	G	N	G	N	D	D	Y	K	N	M	L	K	D	K	N	I	D	A	V	F	V
Template Known Secondary structure												S						.							T		T	T									S															T	T									S	S	T	T	T					T	T		T	T
Template Predicted Secondary structure																		.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	P	N	D	T	H	F	P	L	A	K	A	A	L	E	A	G	K	H	V	V	V	D	K	P	F	T	V	T	L	S	Q	A	R	E	L	D	A	L	A	K	S	L	G	R	V	L	S	V	F	H	N	R	R	W	D	S	D	F	L	T	L	K	G	L	L	A	E	G	V	L	G	E	V	A	Y	F	E	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	S	P	W	E	W	H	H	E	H	G	V	A	A	M	K	A	G	K	I	V	G	M	E	V	S	G	A	I	T	L	E	E	C	W	D	Y	V	K	V	S	E	Q	T	G	V	P	L	M	A	L	E	N	V	C	Y	R	R	D	V	M	A	I	L	N	M	V	R	K	G	M	F	G	E	L	V	H	G	T	G
Template Known Secondary structure					G	G	G											T	T											S	S																							G	G	G	G													T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170																																		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	F	D	R	F	R	P	Q	V	R	D	R	W	R	E	Q	G	G	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	I	W	Y	D	L	A	P	H	L	L	D	Q	A	I	T	L	F	G	L	P	V	S	M	T	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Y	Q	H	D	L	R	P	V	L	F	N	S	G	I	N	G	K	N	G	D	G	V	E	F	G	E	K	A	F	S	E	A	K	W	R	T	N	H	Y	K	N	R	N	G	E	L	Y	P	T	H	G	V	G	P	L	H	T	M	M	D	I	N	R	G	N	R	L	L	R	L	S	S	F	A	S	K	A	R	G
Template Known Secondary structure				B									B		S		T	T			S	S			B		S	T	T	S		G	G	G	G	T										S																T	B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		198	.	200												.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.																																	.	.
Query Sequence		D	L	A	.	.	.	.	.	.	.	.	.	.	.	Q	L	R	P	G	A	Q	S	T	D	Y	F	H	A	I	L	S	Y	P	Q	R	R	V	I	L	H	G	T	M	L	A	A	.	.	A	E	S	A	R	Y	I	V	H	G	S	R	G	S	Y	V	K	Y	G	L	D	P	Q	E	E	R	L	K	N	G	E	R
Query Conservation					.	.	.	.	.	.	.	.	.	.	.																																	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Conservation
Template Sequence		L	H	K	Y	I	V	D	K	G	G	E	S	H	P	N	A	K	V	E	W	K	Q	G	D	I	V	T	T	Q	I	Q	C	H	N	G	E	T	I	V	L	T	H	D	T	S	L	Q	R	P	Y	N	L	G	F	K	V	Q	G	T	E	G	L	W	E	D	F	G	W	G	E	A	A	Q	G	F	I	Y	F	E	K
Template Known Secondary structure												T	T	S	G	G	G	G					S		S									T	T	S								B		S	S													S	S							S	S	S		T	T	S						T	T
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																												.	.	.	.
Query SS confidence																												.	.	.	.
Query Sequence		L	P	Q	E	D	W	G	Y	D	M	R	D	G	V	L	T	R	V	E	G	E	E	R	V	E	E	.	.	.	.	T	L	L	T	V	P	G	N	Y	P	A	Y	Y	A	A	I	R	D	A	L	N	G	D	G	E	N	P	V	P	A	S	Q	A	I	Q	V	M	E	L	I	E	L	G	I	E	S	A	K	H	R
Query Conservation																												.	.	.	.
Alig confidence																												.	.	.	.
Template Conservation
Template Sequence		I	M	N	H	S	H	R	W	D	S	S	E	K	W	I	K	E	Y	D	H	P	M	W	K	K	H	E	Q	K	A	V	G	A	G	H	G	G	M	D	Y	F	L	D	N	T	F	V	E	C	I	K	R	N	E	A	F	P	L	D	V	Y	D	L	A	T	W	Y	S	I	T	P	L	S	E	K	S	I	A	E	N
Template Known Secondary structure		T	T	T	T			S				S							T													S	T	T	S			T																T				S	S																					T	T
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
			341	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	T	L	C	L
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		G	A	V	Q	E	I
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		418	.	420	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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