 |
Job Description | P77376 | Confidence | 95.70% | Date | Thu Jan 5 12:28:19 GMT 2012 |
Rank | 407 | Aligned Residues | 111 |
% Identity | 20% | Template | c2dwcB_ |
PDB info |
PDB header:transferase | Chain: B: PDB Molecule:433aa long hypothetical phosphoribosylglycinamide formyl |
PDBTitle: crystal structure of probable phosphoribosylglycinamide formyl2 transferase from pyrococcus horikoshii ot3 complexed with adp
|
Resolution | 1.70 Å |
|
 |
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|  |  | . | . | . | . | . | . |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | D | N | I | R | V | G | L | I | G | Y | G | Y | A | S | K | T | F | H | A | P | L | I | A | G | T | P | G | Q | E | L | A | V | I | S | S | S | D | E | T | K | V | K | A | D | W | P | T | V | T | V | V | S | E | P | K | . |
. |
. |
. |
. |
. |
H | L | F | N | D | P | N | I | D | L | I | V | I | P | T | P | N | D |
Query Conservation |   |
  |   |   |
|
|
|   |
|
|
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |
|
|
|   |   |   |   |
|
|   |
|   |
|   |
|
|   |   |
Alig confidence |   |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Template Conservation |   |
  |   |   | . |
|
|
|
|
|
|   |
|   |   |   |
|   | . |   |   |   |
|
|   |   |   | . |
|   |   |
|
| . |   |   |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
| . |
|   |   |   |
|   |
Template Sequence |   |
S | A | Q | . |
K | I | L | L | L | G | S | G | E | L | G | K | E | . |
I | A | I | E | A | Q | R | L | . |
G | V | E | V | V | . |
A | V | D | R | Y | A | N | A | P | A | M | Q | V | A | H | R | S | Y | V | G | N | M | M | D | K | D | F | L | W | S | V | V | E | R | E | K | P | D | A | I | . |
I | P | E | I | E | A |
Template Known Secondary structure |   |
T |
|
| . |  |  |  |  |  | S |
| S |  |  |  |  |  | . |  |  |  |  |  |  |  | T | . | T |
|  |  |  | . |  |  |  | S | S | T | T |
|  |  |  |  |  | S | S |  |  |  |  | S |
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  | . |  |  |
| S | S |
|
Template Predicted Secondary structure |   |
|
|
| . |  |  |  |  |  |
|
|
|  |  |  |  |  | . |  |  |  |  |  |  |  |
| . |
|
|  |  |  | . |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  | . |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
18 | . | 20 | |
. | . | . | . | . | . | . | . | . | 30 | . | . | . | |
. | . | . | . | . | . | 40 | . | |
. | . | . | . | . | |
. | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | |
. | . | . | 90 | . | . |
  |
  |   |
76 | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | |
110 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . |  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
Query Sequence |   |
T | H | F | P | L | A | K | A | A | L | E | A | G | K | H | V | V | V | D | K | P | F | T | V | T | L | S | Q | A | R | E | L | D | A | . |
L | A | K | S | L | G | R | V |
Query Conservation |   |
  |
|   |   |   |   |   |   |
|
|   |   |
|
|   |
|
|   |
|
|
|   |
|   |   |   |   |
|   |   |   |
|   |   | . |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |
|   |   |   |   |
|
|
|
Template Sequence |   |
I | N | L | D | A | L | F | E | F | E | K | D | G | Y | F | V | V | P | N | A | R | A | T | W | I | A | M | H | R | E | R | L | R | E | T | L | V | K | E | A | K | V | P |
Template Known Secondary structure |   |
S |
|  |  |  |  |  |  |  |  |  | T | T |
|
| B | S | S |
|  |  |  |  |  |  |  | T | S |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|