Job Description P77376 Confidence 95.65% Date Thu Jan 5 12:28:19 GMT 2012 Rank 412 Aligned Residues 103 % Identity 18% Template c1ldbA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-l-lactate dehydrogenase; PDBTitle: structure determination and refinement of bacillus2 stearothermophilus lactate dehydrogenase Resolution 2.80 Å

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		1	.	.	.	.			.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.											.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.																																									.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.																																									.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	D	N	I	.	.	R	V	G	L	I	G	Y	G	Y	A	S	K	T	F	H	A	P	L	I	A	G	T	P	G	Q	E	L	A	V	I	S	S	S	D	E	T	K	V	K	A	.	.	.	.	.	.	.	.	.	.	D	W	P	T	V	T	V	V	S	E	P	K	H	L	F	N	D	P	N	I	D	L	I
Query Conservation							.	.																																									.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.														.																											.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																						.																																																			.	.	.
Template Sequence		M	K	N	N	G	G	A	R	V	V	V	I	G	A	G	F	V	G	A	S	.	Y	V	F	A	L	M	N	Q	G	I	A	D	E	I	V	L	I	D	A	N	E	S	K	A	I	G	D	A	M	D	F	N	H	G	K	V	F	A	P	K	P	V	D	I	W	D	Y	D	D	C	.	.	.	R	D	A	D	L	V
Template Known Secondary structure				S			S	S								S						.							T	T	T			S							S	S															G	G	G	T	T								G	G	G		.	.	.	S	S		S
Template Predicted Secondary structure																						.																																																			.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90
		69	70	.	.	.	.	.	.	.									.	.	80	.	.	.	.	.	.	.	.	.	90				.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.														.	.	.
Query SS confidence											.	.	.	.	.	.	.	.														.	.	.
Query Sequence		V	I	P	T	P	N	D	T	H	.	.	.	.	.	.	.	.	F	P	L	A	K	A	A	L	E	A	G	K	H	.	.	.	V	V	V	D	K	P	F	T	V	T	L	S	Q	A	R	E	L
Query Conservation											.	.	.	.	.	.	.	.														.	.	.
Alig confidence											.	.	.	.	.	.	.	.														.	.	.
Template Conservation
Template Sequence		V	I	C	A	G	A	N	D	L	V	D	K	N	I	A	I	F	R	S	I	V	E	S	V	M	A	S	G	F	Q	G	L	F	L	V	A	T	N	P	V	D	I	L	T	Y	A	T	W	K	F
Template Known Secondary structure																												T	T			S							S	S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions