Job Description P77376 Confidence 96.43% Date Thu Jan 5 12:28:19 GMT 2012 Rank 353 Aligned Residues 94 % Identity 18% Template c1gv1D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase; PDBTitle: structural basis for thermophilic protein stability:2 structures of thermophilic and mesophilic malate3 dehydrogenases Resolution 2.5 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.														.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	R	V	G	L	I	G	Y	G	Y	A	S	K	T	F	H	A	P	L	I	A	G	T	P	G	Q	E	L	A	V	I	S	S	S	D	E	T	K	V	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	P	T	V	T	V	V	S	E	P	K	H	L	F	N	D	P	N	I	D	L	I	V	I	P
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																											.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																.																																																						.	.	.
Template Sequence		M	K	I	T	V	I	G	A	G	N	V	G	A	T	.	T	A	F	R	I	A	D	K	K	L	A	R	E	L	V	L	L	D	V	V	E	G	I	P	Q	G	K	G	L	D	M	Y	E	T	G	P	V	G	L	F	D	T	K	I	T	G	S	N	D	Y	A	D	T	.	.	.	A	D	S	D	I	V	I	I	T
Template Known Secondary structure										S						.								T	T			S							S	S	S	S											T	T					T									S		G	G	G	S	.	.	.	T	T		S
Template Predicted Secondary structure																.																																																						.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.		.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.				.	.	70	.	.	.	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																													.	.
Query SS confidence																																													.	.
Query Sequence		T	P	N	D	T	H	F	P	L	A	K	A	A	L	E	A	G	K	H	V	V	V	D	K	P	F	T	V	T	L	S	Q	A	R	E	L	D	A	L	A	K	S	L	.	.	G	R	V	L	S	V	F	H	N
Query Conservation																																													.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	M	K	N	A	G	I	V	K	E	V	T	D	N	I	M	K	H	S	K	N	P	I	I	I	V	V	S	N
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	T		S	S								S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.																						80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions