Job Description P69924 Confidence 100.00% Date Thu Jan 5 12:12:23 GMT 2012 Rank 10 Aligned Residues 278 % Identity 24% Template c1smqD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase small chain PDBTitle: structure of the ribonucleotide reductase rnr2 homodimer2 from saccharomyces cerevisiae Resolution 3.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		Q	L	K	E	P	M	F	F	G	Q	P	V	N	V	A	R	Y	D	Q	Q	K	Y	D	I	F	E	K	L	I	E	K	Q	L	S	F	F	W	R	P	E	E	V	D	V	S	R	D	R	I	D	Y	Q	A	.	L	P	E	H	E	K	H	I	F	I	S	N	L	K	Y	Q	T	L	L	D	S	I	Q	G	R	S
Query Conservation																																																							.
Alig confidence																	.																																						.																										.
Template Conservation																	.																																																																.
Template Sequence		E	K	E	E	P	L	L	N	E	D	K	E	R	T	V	.	L	F	P	I	K	Y	H	E	I	W	Q	A	Y	K	R	A	E	A	S	F	W	T	A	E	E	I	D	L	S	K	D	I	H	D	W	N	N	R	M	N	E	N	E	R	F	F	I	S	R	V	L	A	F	F	A	A	S	E	N	L	V	E	N	.
Template Known Secondary structure		G	G	G		G	G	G	S			T	T			S	.	S		S		S													T	T				G	G	G				S									T	S																T	T							T	.
Template Predicted Secondary structure																	.																																																																.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		P	N	V	A	L	L	P	L	I	S	I	P	E	L	E	T	W	V	E	T	W	A	F	S	E	T	I	H	S	R	S	Y	T	H	I	I	R	N	I	V	N	D	P	S	V	.	.	.	V	F	D	D	I	V	T	N	E	Q	I	Q	K	R	A	E	G	I	S	S	Y	Y	D	E	L	I	E	M	T	S	Y	W
Query Conservation																																															.	.	.
Alig confidence		.	.	.	.																																										.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																																																				.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	F	S	T	E	V	Q	I	P	E	A	K	S	F	Y	G	F	Q	I	M	I	E	N	I	H	S	E	T	Y	S	L	L	I	D	T	Y	I	K	D	P	K	E	S	E	F	L	F	N	A	I	H	T	I	P	E	I	G	E	K	A	E	W	A	L	R	W	I	Q	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	T	T	S	S																																												T	T	S																T	T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.																																																																				.	.	.	.	.	.	.	.	.
Template SS confidence
						156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	L	G	E	G	T	H	T	V	N	G	K	T	V	T	V	S	L	R	E	L	K	K	K	L	Y	L	C	L	M	S	V	N	A	L	E	A	I	R	F	Y	V	S	F	A	C	S	F	A	F	A	E	R	E	L	M	E	G	N	A	K	I	I	R	L	I	A	R	D	E	A	L	H	L	T	G	T	Q	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	D	A	L	F	G	E	R	L	V	A	F	A	S	I	E	G	V	F	F	S	G	S	F	A	S	I	F	W	L	K	K	R	G	M	M	P	G	L	T	F	S	N	E	L	I	C	R	D	E	G	L	H	T	D	F	A	C	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S																T	T	T													T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																						223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	N	L	L	R	S	G	A	D	D	P	E	M	A	E	I	A	E	E	C	K	Q	E	C	Y	D	L	F	V	Q	A	A	Q	Q	E	K	D	W	A	D	Y	L	F	R	D	G	S	M	I	G	L	N	K	D	I	L	C	Q	Y	V	E	Y	I	T	N	I	R	M	Q	A	V	G	L	D	L	P	F	Q	T
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.																									.
Template Sequence		L	F	A	H	L	K	N	K	P	D	P	.	.	.	.	.	.	.	.	.	.	.	A	I	V	E	K	I	V	T	E	A	V	E	I	E	Q	R	Y	F	L	D	A	L	P	V	.	A	L	L	G	M	N	A	D	L	M	N	Q	Y	V	E	F	V	A	D	R	L	L	V	A	F	G	N	K	K	Y	Y	K	V
Template Known Secondary structure							S	S					.	.	.	.	.	.	.	.	.	.	.																			T	T	T			G	.	G	G	G	T																						T				S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.																									.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.												.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		329	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	N	P	I	P	W	I	N	T
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	E	N	P	F	D	F	M	E	N
Template Known Secondary structure		.					S	T	T
Template Predicted Secondary structure		.
Template SS confidence
			351	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions