Return to main results Retrieve Phyre Job Id

Job DescriptionP37057
Confidence93.39%DateThu Jan 5 11:54:46 GMT 2012
Rank6Aligned Residues37
% Identity24%Templatec1i3qI_
PDB info PDB header:transcriptionChain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10......... 20.........30.........40
Predicted Secondary structure 







..






Query SS confidence 

















. .




















Query Sequence  FHCPLCQHAAHARTSRYI. . TDTTKERYHQCQNVNCSATFI
Query Conservation 
 

 

  
 



   ..
   
  
 

 
  

 


Alig confidence 

















..












..





Template Conservation    




   
 
   







 



 
 
..


 

Template Sequence  RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLS. . CSHIFT
Template Known Secondary structure 


TTT

S
B


S


SS



BTT..T

Template Predicted Secondary structure 

















..



Template SS confidence 








































   73......80.........90.........100..... ....110.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions