|   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | N | S | Q | G | Q | L | Y | I | V | P | T | P | I | G | N | L | A | D | I | T | Q | R | A | L | E | V | L | Q | A | V | D | L | I | A | A | E | D | T | R | H | T | G | L | L | L | Q | H | F | G | I | N | A | R | L | F | A | L | H | D | H | N | E | Q | Q | K | A | E | T | L | L | A | K | L | Q | E | G | Q | N | I |
Query Conservation |   |
  |   |   |   |
|   |
|
|
|
|
|
|
|   |
|
|   |   |   |
|
|   |
|
|   |   |   |
|   |   |
|
|
|
|   |   |
|
|
|   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |
|   |
|
|
|   |
|
|
|   |   |   |   |
|
|   |   |
|   |   |   |
|   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |
|
Template Sequence |   |
R | G | S | H | M | K | L | Y | I | I | G | A | G | P | G | D | P | D | L | I | T | V | K | G | L | K | L | L | Q | Q | A | D | V | V | L | Y | A | D | S | L | V | S | Q | D | L | I | A | K | S | K | P | G | A | E | V | L | K | T | A | G | M | H | L | E | E | M | V | G | T | M | L | D | R | M | R | E | G | K | M | V |
Template Known Secondary structure |   |
| S | T | T | S |  |  |  |  |  |  |
| B | S | S |
| G | G | G | S |
|  |  |  |  |  |  |  |  |  |
| S |  |  |  |  |
| T | T | T | S |
|  |  |  |  | T | T | S |
| T | T |
|  |  |  |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . |
  |
  |   |
88 | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | |
|
|
|
|
|
. | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | L | V | S | D | A | G | T | P | L | I | N | D | P | G | Y | H | L | V | R | T | C | R | E | A | G | I | R | V | V | P | L | P | G | P | C | A | A | I | T | A | L | S | A | A | G | L | P | . |
. |
. |
. |
. |
. |
S | D | R | F | C | Y | E | G | F | L | P | A | K | S | K | G | R | R | D | A | L | K | A | I | E | A |
Query Conservation |   |
|   |
|
|
|
|
|
|
|   |
|   |
|   |
|   |   |
|
|   |   |   |   |   |   |
|
|   |
|   |
|
|
|
|
|
|
|   |   |
|
|   |
|   |
|
|   |   | . | . | . | . | . | . |   |   |   |
|   |
|   |
|
|
|
|   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |
Alig confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   | . |   |
|
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|   |
|
|
|
|
|
|
|   |   |
|
|   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
Template Sequence |   |
V | R | V | H | . |
T | G | D | P | A | M | Y | G | A | I | M | E | Q | M | V | L | L | K | R | E | G | V | D | I | E | I | V | P | G | V | T | S | V | F | A | A | A | A | A | A | E | A | E | L | T | I | P | D | L | T | Q | T | V | I | L | T | R | A | E | G | R | T | P | V | P | E | F | E | K | L | T | D | L | A | K |
Template Known Secondary structure |   |
 |  |  |  | . | S | B |
| T | T | T | T |
|
|
|  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  | T | T |
|
| S |
| B | T | T | T | B |
|
|  |  |  |  |  |
|
| S | S | S |
|
|
| G | G | G |
|  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  | . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
97 | . | . | 100 | |
. | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . |
  |
  |   |
162 | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | |
. | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | P | R | T | L | I | F | Y | E | S | T | H | R | L | L | D | S | L | E | D | I | V | A | V | . |
L | G | E | S | R | Y | V | V | L | A | R | E | L | T | K | T | W | E | T | I | H | G | A | P | V | G | E | L | L | A | W | V | K | E | D | E | N | R | R | K | G | E | M | V | L | I | V | E | G | H | K | A |
Query Conservation |   |
  |   |   |
|   |
|   |   |
|
|
|   |
|
|   |   |   |
|   |   |
|   |   |   | . |   |   |   |   |   |   |
|   |
|   |
|
|
|
|
|   |   |
|   |
|   |   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|
|
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|
|   |   |   |
|   |
|   |   |   |
|
|   |
|
|   |   |   |   |   |   |   |   | . | . |   |   |   |   |   |
|
|
|
|
|   |   |   |   |
Template Sequence |   |
H | K | C | T | I | A | L | F | L | S | S | T | L | T | K | K | V | M | K | E | F | I | N | A | G | W | S | E | D | T | P | V | V | V | V | Y | K | A | T | W | P | D | E | K | I | V | R | T | T | V | K | D | L | D | D | A | M | R | T | N | G | . |
. |
I | R | K | Q | A | M | I | L | A | G | W | A | L | D |
Template Known Secondary structure |   |
T |
| S |  |  |  |  |  | S |
| T | T |
|  |  |  |  |  |  |  |  |  |  | T | T |
|
| T | T |
|  |  |  |  |  |  | S | T | T | S | T | T |
|  |  |  |  |  |  | G | G | G |  |  |  |  |  |  |  | T | T | . | . |
|
| S | S |  |  |  |  |  | S | G | G | G |
|
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
176 | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | |
|
. | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 |
  |