 |
Job Description | P0AFX0 | Confidence | 9.68% | Date | Thu Jan 5 11:27:28 GMT 2012 |
Rank | 23 | Aligned Residues | 76 |
% Identity | 18% | Template | c3r23B_ |
PDB info |
PDB header:ligase | Chain: B: PDB Molecule:d-alanine--d-alanine ligase; |
PDBTitle: crystal structure of d-alanine--d-alanine ligase from bacillus2 anthracis
|
Resolution | 2.50 Å |
|
 |
  |   |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
|
. | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  | . | . | . | . | . | . |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | I | T | E | A | L | R | E | F | V | T | A | K | F | A | K | L | E | Q | Y | F | D | . |
. |
R | I | N | Q | V | Y | V | V | L | K | V | E | K | V | T | H | T | S | D | A | T | L | H | V | N | G | G | E | . |
. |
. |
. |
. |
. |
I | H | A | S | A | E | G | Q | D | M | Y | A | A | I | D | G | L | I | D | K | L | A |
Query Conservation |   |
  |   |
|   |
|
|   |   |   |
|   |   |
|   |   |
|
|   |
|   |   |   | . | . |   |
|   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |
|
|
|   |
|   |   |   |
|   |   | . | . | . | . | . | . |
|   |
|   |   |   |   |   |
|   |   |   |
|
|
|   |
|   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|   |   |   |
|
|   |   |   |   | . |   |
|   |   |   |
|
|
|
|
|   |
| . |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|   |   |   | . | . | . |
|   |
Template Sequence |   |
E | L | P | A | E | L | K | E | R | V | N | K | A | S | L | A | C | Y | K | A | L | K | C | S | V | Y | A | R | V | D | X | X | V | K | . |
D | G | I | P | Y | V | X | E | V | N | T | L | . |
P | G | X | T | Q | A | S | L | L | P | K | S | A | D | A | A | G | I | H | Y | S | K | L | L | D | X | I | . |
. |
. |
I | E |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |
|  |  |  |  |  |  |  |  | . | T | T |  |  |  |  |  |  |  |  | S | S | . |
|
|
| S | T | T | S |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  | . | . | . |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  | . |
|
|  |  |  |  |  |  |  |
|
|
| . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  | . | . | . |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
219 | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | |
. | . | . | . | . | . | . | 260 | . | . | . | . | |
. | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | |
|
|
. | . |
  |
  |   |
83 | . | . | . | . | . | . | 90 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | Q | L | T | K | H | K | D | K |
Query Conservation |   |
|
|
|   |
|   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |   |   |   |
Template Sequence |   |
T | S | L | R | V | R | K | E | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
  |   |
294 | . | . | . | . | . | 300 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|