Job Description P75835 Confidence 97.82% Date Thu Jan 5 12:14:49 GMT 2012 Rank 7 Aligned Residues 393 % Identity 11% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.																					.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	N	V	Q	E	K	Q	L	R	W	Y	N	I	A	L	M	S	F	I	T	V	W	G	F	G	N	V	V	N	N	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	G	L	V	V	V	F	S	W	V	F	I	F	A	L	Y	F	T	P	Y	A	L	I	V	G	Q	L
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																																																																									.
Template Sequence		R	I	D	E	A	P	E	F	R	T	V	S	W	I	S	X	X	F	A	A	G	X	G	I	G	L	X	F	Y	G	T	T	E	P	L	T	F	Y	R	N	G	V	P	G	H	D	E	H	N	V	G	V	A	X	S	T	T	X	F	H	W	T	L	H	P	W	A	I	Y	A	I	.	V	G	L	A	I	A	Y	S
Template Known Secondary structure		S	T	T				S	S																																T			T	T	S		S	S														S										.
Template Predicted Secondary structure																																																																									.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.						.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		G	S	T	F	K	D	G	K	G	G	V	S	T	W	I	K	H	T	M	G	P	G	.	.	.	.	.	L	A	Y	L	A	A	W	T	Y	W	V	V	H	I	P	Y	L	A	Q	K	P	Q	A	I	L	I	A	L	G	W	A	M	K	G	D	G	S	L	I	K	E	Y	S	V	V	A	L	Q	G	L	T	L	V
Query Conservation																								.	.	.	.	.
Alig confidence									.															.	.	.	.	.
Template Conservation									.
Template Sequence		T	F	R	V	G	R	K	.	Q	L	L	S	S	A	F	V	P	L	I	G	E	K	G	A	E	G	W	L	G	K	L	I	D	I	L	A	I	I	A	T	V	F	G	T	A	C	S	L	G	L	G	A	L	Q	I	G	A	G	L	S	A	A	N	I	I	E	S	D	W	T	I	V	G	I	V	S	V	L	T	L
Template Known Secondary structure		T	T	T	S				.	S	S	G	G	G	G	G	T	T	T	S		T	T	T			S	S	S	S																															T	T	T	S
Template Predicted Secondary structure									.
Template SS confidence
		208	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.										.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure												.																									.	.	.	.	.	.	.	.	.
Query SS confidence												.																									.	.	.	.	.	.	.	.	.
Query Sequence		L	F	I	F	F	M	W	V	A	S	.	R	G	M	K	S	L	K	I	V	G	S	V	A	G	I	A	M	F	V	M	S	L	L	Y	.	.	.	.	.	.	.	.	.	V	A	M	A	V	T	A	P	A	I	T	E	V	H	I	A	T	T	N	I	T	W	E	T	F	I	P	H	I	D	F	T	Y	I	T	T
Query Conservation												.																									.	.	.	.	.	.	.	.	.
Alig confidence												.																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	F	I	F	S	A	I	S	G	V	G	K	G	I	Q	Y	L	S	N	A	N	X	V	L	A	A	L	L	A	I	F	V	F	V	V	G	P	T	V	S	I	L	N	L	L	P	G	S	I	G	N	Y	L	S	N	F	F	Q	X	A	G	R	T	A	X	S	A	D	G	T	A	G	E	W	L	G	S	W	T	I
Template Known Secondary structure			T	T	G	G	G	T	T	S			S																								S																									T			T	T	T	T	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	M	L	V	F	A	V	G	G	A	E	K	I	S	P	Y	V	N	Q	T	R	N	P	G	K	E	F	P	K	G	M	L	C	L	A	V	M	V	A	V	C	A	I	L	G	S	L	A	M	G	M	M	F	D	S	R	N	I	P	D	D	L	M	T	N	G	Q	Y	Y	A	F	Q	K	L	G	E	Y	Y	N
Query Conservation
Alig confidence																								.	.
Template Conservation																								.	.
Template Sequence		F	Y	W	A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	.	.	G	R	S	I	R	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A
Template Known Secondary structure									T	T												T	T	.	.	T																																				T						T	T		S										T
Template Predicted Secondary structure																								.	.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	N	T	L	M	V	I	Y	A	I	A	N	T	L	G	Q	V	A	A	L	V	F	S	I	D	A	P	L	K	V	L	L	G	D	A	D	S	K	Y	I	P	A	S	L	C	R	T	N	A	S	G	T	P	V	N	G	Y	F	L	T	L	V	L	V	A	I	L	I	M	L	P	T	L	G	I	G	D	M	N
Query Conservation
Alig confidence				.	.																																				.	.	.	.	.	.	.	.	.
Template Conservation				.	.																																				.	.	.	.	.	.	.	.	.
Template Sequence		L	P	.	.	G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	.	.	.	.	.	.	.	.	.	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	I	G	L	T	L	L	L	S	G	G	D	N	A	L
Template Known Secondary structure		S	T	.	.	T																															T	T	T	T	.	.	.	.	.	.	.	.	.		S	S																									G	G	G
Template Predicted Secondary structure				.	.																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		447	.			.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.										.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	Y	K	W	L	L	N	L	N	S	V	V	M	P	L	R	Y	L	W	V	F	V	A	F	I	A	V	V	R	L	A	Q	K	Y	K	P	E	Y	V	F	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q	R
Template Known Secondary structure																																T
Template Predicted Secondary structure
Template SS confidence
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.