Job Description P45541 Confidence 90.31% Date Thu Jan 5 12:03:00 GMT 2012 Rank 90 Aligned Residues 200 % Identity 14% Template c3noyA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; PDBTitle: crystal structure of ispg (gcpe) Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	F	R	D	A	S	E	L	G	Y	D	G	I	E	I	W	G	G	R	P	H	A	F	A	P	D	L	K	A	G	G	I	K	Q	I	K	A	L	A	Q	T	Y	Q	M	P	I	I	G	Y	T	P	E	T	N	G	Y	P	Y	N	M	M	L	G	D	E	H	M	R	R	E	S	L	D	M	I	K	L	A	M
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	Q	I	K	R	L	Y	E	A	G	C	E	I	V	R	V	A	V	P	.	.	.	.	.	.	.	.	.	H	K	E	D	V	E	A	L	E	E	I	V	K	K	S	P	M	P	V	I	A	.	.	.	.	.	.	.	.	D	I	H	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	Y	A
Template Known Secondary structure										T	T										.	.	.	.	.	.	.	.	.	S															S	S					.	.	.	.	.	.	.	.				S		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.										60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80									.	.	.	.	.															.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.													.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																						.				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	M	A	K	E	M	N	A	G	Y	T	L	I	S	A	A	H	A	G	Y	L	T	P	P	N	V	I	W	G	R	L	A	E	N	L	S	E	L	C	E	Y	A	E	N	I	G	M	D	L	I	L	E	.	P	L	T	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	E	S	N	V	V	C	N	A	N	D
Query Conservation																																																						.				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.																						.				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	L	S	M	E	K	G	V	H	G	I	R	I	N	P	G	N	I	G	K	.	.	.	.	.	.	.	.	.	.	.	E	E	I	V	R	E	I	V	E	E	A	K	R	R	G	V	A	V	R	I	G	V	N	S	G	S	L	E	K	D	L	L	E	K	Y	G	Y	P	S	A	E	A	L	A	E	S	A	L	R
Template Known Secondary structure							T	T		S										S		.	.	.	.	.	.	.	.	.	.	.															T									G	G	G										S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.												110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	H	A	L	A	L	V	P	S	P	R	L	F	S	M	V	D	I	C	A	P	Y	V	Q	A	E	P	V	M	S	Y	F	D	K	L	G	D	K	L	R	H	L	H	I	V	D	S	D	G	A	S	D	T	H	Y	I	P	G	E	G	K	M	P	L	R	E	L	M	R	D	I	I	E	R	G	Y	E	G	Y
Query Conservation
Alig confidence																																						.														.	.	.	.	.	.	.
Template Conservation																																						.														.	.	.	.	.	.	.
Template Sequence		W	S	E	K	F	E	K	W	G	F	T	N	Y	K	V	S	I	K	G	S	D	V	L	Q	N	V	R	A	N	L	I	F	A	E	R	T	.	D	V	P	L	H	I	G	I	T	E	A	G	M	.	.	.	.	.	.	.	G	T	K	G	I	I	K	S	S	V	G	I	G	I	L	L	Y	M	G	I	G	D	T
Template Known Secondary structure									T	T											S	S																.									S	S			S	.	.	.	.	.	.	.																		T	T			S
Template Predicted Secondary structure																																						.														.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.								.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		C	T	V	E	L	V	T	M	Y	M	N	E	P	R	L	Y	A	R	Q	A	L	E	R	F	R	A	L
Query Conservation
Alig confidence							.	.	.	.
Template Conservation							.	.	.	.
Template Sequence		V	R	V	S	L	.	.	.	.	T	D	D	P	V	V	E	V	E	T	A	Y	E	I	L	K	S	L
Template Known Secondary structure							.	.	.	.	S	S																T
Template Predicted Secondary structure							.	.	.	.
Template SS confidence
		231	.	.	.	.					.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions