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Job DescriptionP45541
Confidence30.04%DateThu Jan 5 12:03:00 GMT 2012
Rank441Aligned Residues171
% Identity12%Templatec3cyvA_
PDB info PDB header:lyaseChain: A: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 shigella flexineri: new insights into its catalytic3 mechanism
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   83......90.........100.........110.........120.........130.........140.. .......150.........
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Query Sequence  HMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIG. . . MDLILEPLTPYESNVVC
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Template Sequence  ALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGG. VLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLF. . . . . . . . TK
Template Known Secondary structure  TT
S
TTGG.GS
TS
STT

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T
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   180.........190.........200.........210.. .......220.........230.........240........ .250
 
   160.........170.........180.........190.........200.........210.........220.........230.........
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Query Sequence  NANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTHYIPGEGKMPLRELMRDIIERG
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Template Sequence  GGGQWLEAMAETGCDALGL. . . . . . . . DWTTDIADARRRVGNKVALQ. . . . . . GNMDPSMLYAPPARIEEEVATILAGFG
Template Known Secondary structure  TTTTTTTS
S
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GGGGGS
TTTT
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   251........260......... 270.........280......... 290.........300.........310......
 
   240......... 250.........260.........270......
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Query Sequence  YEGYCTVELV. TMYMNEPRLYARQALERFRALLPEDER
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Template Sequence  HGEGHVFNLGHGIHQDVPPEHAGVFVEAVHRLSEQYHR
Template Known Secondary structure  TSS
B
BSS


TTS
GGGG
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   317..320.........330.........340.........350....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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