Job Description P45541 Confidence 75.45% Date Thu Jan 5 12:03:00 GMT 2012 Rank 172 Aligned Residues 152 % Identity 14% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.									.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.		.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.																		.
Query SS confidence																																										.	.	.	.	.	.	.	.																		.
Query Sequence		K	T	G	M	F	T	C	G	H	Q	R	L	P	I	E	H	A	F	R	D	A	S	E	L	G	Y	D	G	I	E	I	W	G	G	R	P	H	A	F	A	.	.	.	.	.	.	.	.	P	D	L	K	A	G	G	I	K	Q	I	K	A	L	A	Q	T	.	Y	Q	M	P	I	I	G	Y	T	P	E	T	N	G
Query Conservation																																										.	.	.	.	.	.	.	.																		.
Alig confidence																																										.	.	.	.	.	.	.	.																		.
Template Conservation
Template Sequence		P	I	A	L	Q	L	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	G	L	E
Template Known Secondary structure		S								S															T	T		S										S							T		G	G	G	G	G	G														T	T		S	S								S		B	T
Template Predicted Secondary structure
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		Y	P	Y	N	M	M	L	G	D	E	H	M	R	R	E	S	L	D	M	I	K	L	A	M	D	M	A	K	E	M	N	A	G	Y	T	L	I	S	A	A	H	A	G	Y	L	T	P	P	N	V	I	W	G	R	L	A	E	N	L	S	E	L	C	E	Y	A	E	N	I	.	G	M	D	L	I	L	E	P	L	T
Query Conservation																																																																							.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.																																																							.										.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.																																																																	.
Template Sequence		G	K	E	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	.
Template Known Secondary structure		T			.	.	.	.	.	.	.	.	.	.	.	.															T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.																																																																	.
Template SS confidence
		139	140	.													.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	E	S	N	V	V	C	N	A	N	D	V	L	H	A	L	A	L	V	P
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	I	R	S	L	E	E	A	L	F	H	L	K	R	V	D
Template Known Secondary structure		.	.	.	.	.	.			S									T	T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								206	.	.	.	210	.	.	.	.	.	.	.	.	.	220

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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