Job Description P45541 Confidence 60.35% Date Thu Jan 5 12:03:00 GMT 2012 Rank 252 Aligned Residues 188 % Identity 14% Template c2p3eA_ PDB info PDB header:lyase Chain: A: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: crystal structure of aq1208 from aquifex aeolicus Resolution 1.99 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		C	G	H	Q	R	L	P	I	E	H	A	F	R	D	A	S	E	L	G	Y	D	G	I	E	I	W	G	G	R	P	H	A	F	A	P	D	L	K	A	G	G	I	K	Q	I	K	A	L	A	Q	T	Y	Q	M	.	.	P	I	I	G	Y	T	P	E	T	N	G	Y	P	Y	N	M	M	L	G	D	E	H	M	R
Query Conservation																																																								.	.
Alig confidence																						.						.	.	.	.	.	.	.	.	.	.	.										.	.	.	.					.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.						.	.	.	.	.	.	.	.	.	.	.										.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	A	V	K	A	N	F	N	P	H	L	V	K	L	L	G	E	L	G	A	.	G	A	D	I	V	.	.	.	.	.	.	.	.	.	.	.	S	G	G	E	L	Y	L	A	K	.	.	.	.	K	A	G	I	P	P	E	R	I	V	Y	A	G	V	G	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				G	G	G													T	T		.					S	.	.	.	.	.	.	.	.	.	.	.	S									.	.	.	.		T	T			G	G	G					S	S				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.						.	.	.	.	.	.	.	.	.	.	.										.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.												.	.	.	90	.	.	.	.	.					.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		R	E	S	L	D	M	I	K	L	A	M	D	M	A	K	E	M	N	A	G	Y	T	L	I	S	A	A	H	A	G	Y	L	T	P	P	N	V	I	W	G	R	L	A	E	N	L	S	E	L	C	E	Y	A	E	N	I	G	M	.	.	D	L	I	L	E	P	L	T	P	Y	E	S	N	V	V	C	N	A	N	D
Query Conservation																																																												.	.
Alig confidence		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	E	K	E	L	T	D	A	V	D	S	E	I	L	M	F	N	V	E	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	E	L	D	V	L	N	E	I	A	G	K	L	G	K	K	A	R	I	A	I	R	V	N	P	S	K	F	G	V	D	I	R	E	A	Q	K
Template Known Secondary structure		.	.	.	.	.	.	.										T	T		S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															T														S				G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.																	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.								.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure										.																																	.	.	.	.	.	.	.
Query SS confidence										.																																	.	.	.	.	.	.	.
Query Sequence		V	L	H	A	L	A	L	V	.	P	S	P	R	L	F	S	M	V	D	I	C	A	P	Y	V	Q	A	E	P	V	M	S	Y	F	D	K	L	G	D	K	L	.	.	.	.	.	.	.	R	H	L	H	I	V	D	S	D	G	A	S	D	T	H	Y	I	P	G	E	G	K	M	P	L	R	E	L	M	R	D	I
Query Conservation										.																																	.	.	.	.	.	.	.
Alig confidence										.																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Y	E	Y	A	S	K	L	E	N	L	E	I	V	G	I	H	C	H	I	G	S	Q	I	L	D	I	S	P	Y	R	E	A	V	E	K	V	V	S	L	Y	E	S	L	T	Q	K	G	F	D	I	K	Y	L	D	I	G	G	G	L	G	I	K	Y	K	P	E	D	K	E	P	A	P	Q	D	L	A	D	L	L
Template Known Secondary structure								T		T	T												S	S	B	S	S		T																			T	T												B					S	T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	R	G	Y	E	G	Y	C	T	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D	L	L	V	K	A	K	I	I	L	E
Template Known Secondary structure		T	T	T				S
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions