Job Description P45541 Confidence 96.56% Date Thu Jan 5 12:03:00 GMT 2012 Rank 51 Aligned Residues 227 % Identity 18% Template c1ydnA_ PDB info PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of the hmg-coa lyase from brucella melitensis,2 northeast structural genomics target lr35. Resolution 2.30 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		Q	R	L	P	I	E	H	A	F	R	D	A	S	E	L	.	.	.	G	Y	D	G	I	E	I	W	G	G	R	P	H	A	F	A	P	D	L	K	A	G	G	I	K	Q	I	K	A	L	A	Q	T	Y	Q	M	P	I	I	G	Y	T	P	E	T	N	G	Y	P	Y	N	M	M	L	G	D	E	H	M	R	R	E
Query Conservation																	.	.	.
Alig confidence																	.	.	.																				.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	F	V	P	T	A	D	K	I	A	L	I	N	R	L	S	D	C	G	Y	A	R	I	E	A	T	S	F	V	S	P	K	W	V	P	Q	L	.	A	D	S	R	E	V	X	A	G	I	R	R	A	D	G	V	R	Y	S	V	L	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S															T	T	T	T		S								S		T	T	T		G	G	G	.	T	T								S				S	S	S							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.			.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.						.	160
Predicted Secondary structure																																				.	.																																						.	.	.	.	.
Query SS confidence																																				.	.																																						.	.	.	.	.
Query Sequence		S	L	D	M	I	K	L	A	M	D	M	A	K	E	M	N	A	G	Y	T	L	I	S	A	A	H	A	G	Y	L	T	P	P	N	.	.	V	I	W	G	R	L	A	E	N	L	S	E	L	C	E	Y	A	E	N	I	G	M	D	L	I	L	E	P	L	T	P	Y	E	S	N	V	V	.	.	.	.	.	C	N
Query Conservation																																				.	.																																						.	.	.	.	.
Alig confidence		.	.	.	.																															.	.																																						.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	N	X	K	G	Y	E	A	A	A	A	A	H	A	D	E	I	A	V	F	I	S	A	S	E	G	F	S	K	A	N	I	N	C	T	I	A	E	S	I	E	R	L	S	P	V	I	G	A	A	I	N	D	G	L	A	I	R	G	Y	V	S	C	V	V	E	C	P	Y	D	G	P	V	T	P	Q	A
Template Known Secondary structure		.	.	.	.	S										T	T		S								S									T	S	S																			T	T										S	S			T	T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.																	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																												.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	N	D	V	L	H	A	L	A	L	V	P	S	P	R	L	F	S	M	V	D	I	C	A	P	Y	.	.	V	Q	A	E	P	V	M	S	Y	F	D	K	L	G	D	K	L	R	H	L	H	I	V	D	S	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	D	T	H	Y	I	P	G
Query Conservation																												.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	S	V	T	E	Q	L	F	S	L	G	C	H	E	V	S	L	G	D	T	I	G	R	G	T	P	D	T	V	A	A	X	L	D	A	V	L	A	I	A	P	A	H	S	L	A	G	H	Y	H	D	T	G	G	R	A	L	D	N	I	R	V	S	L	E	K	G	L	R	V	F	D	A	S	V	G	G	L	G
Template Known Secondary structure													T		S							T	T	S																T	T	S		G	G	G						B		T	T	S													T							B	T	T			S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		223									.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.
Query Sequence		E	.	.	.	.	.	.	.	.	G	K	M	P	L	R	E	L	M	R	D	I	I	E	R	G	Y	E	G	Y	C	T	V	E	L	V	T	M	Y	M	N	E	P	R	L	Y	A	R	Q	A	L	E	R	F	R	A
Query Conservation			.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.
Template Sequence		G	C	P	F	A	P	G	A	K	G	N	V	D	T	V	A	V	V	E	X	L	H	E	X	G	F	E	.	.	.	.	.	.	.	.	T	G	L	D	L	D	R	L	R	S	A	G	L	F	T	Q	A	L	R	Q
Template Known Secondary structure			B	T	T	B	T	T	S			B		B											T	T		B	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.									.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions