Job Description P25665 Confidence 100.00% Date Thu Jan 5 11:42:13 GMT 2012 Rank 3 Aligned Residues 731 % Identity 50% Template c1u22A_ PDB info PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate-- PDBTitle: a. thaliana cobalamine independent methionine synthase Resolution 2.65 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	H	T	L	G	F	P	R	V	G	L	R	R	E	L	K	K	A	Q	E	S	Y	W	A	G	N	S	T	R	E	E	L	L	A	V	G	R	E	L	R	A	R	H	W	D	Q	Q	K	Q	A	G	I	D	L	L	P	V	G	D	F	A	W	Y	D	H	V	L	T	T	S	L	L	L	G	N	V	P	A	R	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	H	I	V	G	Y	P	R	X	G	P	K	R	E	L	K	F	A	L	E	S	F	W	D	G	K	S	T	A	E	D	L	Q	K	V	S	A	D	L	R	S	S	I	W	K	Q	X	S	A	A	G	T	K	F	I	P	S	N	T	F	A	H	Y	D	Q	V	L	D	T	T	A	X	L	G	A	V	P	P	R	Y
Template Known Secondary structure					S				S	S		T	T													T	S	S																						T	T	T		S	B				S				S	S										T	T				G	G	G
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	K	D	G	S	V	D	I	D	T	L	F	R	I	G	R	G	R	A	P	T	G	E	P	A	A	A	A	E	M	T	K	W	F	N	T	N	Y	H	Y	M	V	P	E	F	V	K	G	Q	Q	F	K	L	T	W	T	Q	L	L	D	E	V	D	E	A	L	A	L	G	H	K	V	K	P	V	L	L	G	P
Query Conservation
Alig confidence																					.	.	.	.
Template Conservation																					.	.	.	.
Template Sequence		G	Y	T	G	G	E	I	G	L	D	V	Y	F	S	X	A	R	G	N	.	.	.	.	A	S	V	P	A	X	E	X	T	K	W	F	D	T	N	Y	H	Y	I	V	P	E	L	G	P	E	V	N	F	S	Y	A	S	H	K	A	V	N	E	Y	K	E	A	K	A	L	G	V	D	T	V	P	V	L	V	G	P
Template Known Secondary structure					S	S	S														.	.	.	.	S	S	S									T	T	S	S										T	T																				T	T
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.					.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.				.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.	.	.	.	.
Predicted Secondary structure										.	.	.																																																													.	.	.
Query SS confidence										.	.	.																																																													.	.	.
Query Sequence		V	T	W	L	W	L	G	K	.	.	.	V	K	G	E	Q	F	D	R	L	S	L	L	N	D	I	L	P	V	Y	Q	Q	V	L	A	E	L	A	K	R	G	I	E	W	V	Q	I	D	E	P	A	L	V	L	E	L	P	Q	A	W	L	D	A	Y	K	P	A	Y	D	A	L	.	.	.	Q	G	Q	V	K	L
Query Conservation										.	.	.																																																													.	.	.
Alig confidence										.	.	.																																																													.	.	.
Template Conservation
Template Sequence		V	S	Y	L	L	L	S	K	A	A	K	G	V	D	K	S	F	E	L	L	S	L	L	P	K	I	L	P	I	Y	K	E	V	I	T	E	L	K	A	A	G	A	T	W	I	Q	L	D	E	P	V	L	V	X	D	L	E	G	Q	K	L	Q	A	F	T	G	A	Y	A	E	L	E	S	T	L	S	G	L	N	V
Template Known Secondary structure												T	T	S		T	T			G	G	G	G																			T		S							G	G	G	G	S																						S	S	S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.	.
Predicted Secondary structure											.												.																																																						.	.	.
Query SS confidence											.												.																																																						.	.	.
Query Sequence		L	L	T	T	Y	F	E	G	V	.	T	P	N	L	D	T	I	T	A	L	P	.	V	Q	G	L	H	V	D	L	V	H	G	K	D	D	V	A	E	L	H	K	R	L	P	S	D	W	L	L	S	A	G	L	I	N	G	R	N	V	W	R	A	D	L	T	E	K	Y	A	Q	I	K	D	I	.	.	.	V	G
Query Conservation											.												.																																																						.	.	.
Alig confidence											.												.																																																						.	.	.
Template Conservation
Template Sequence		L	V	E	T	Y	F	A	D	I	P	A	E	A	Y	K	T	L	T	S	L	K	G	V	T	A	F	G	F	D	L	V	R	G	T	K	T	L	D	L	V	K	A	G	F	P	E	G	K	Y	L	F	A	G	V	V	D	G	R	N	I	W	A	N	D	F	A	A	S	L	S	T	L	Q	A	L	E	G	I	V	G
Template Known Secondary structure							S	S											T	T		S	S								T	T	T		T	T							T				S	S										S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		K	R	D	L	W	V	A	S	S	C	S	L	L	H	S	P	I	D	L	S	V	E	T	R	L	D	A	E	V	K	S	W	F	A	F	A	L	Q	K	C	H	E	L	A	L	L	R	D	A	L	N	S	G	D	T	A	A	.	L	A	E	W	S	A	P	I	Q	A	R	R	H	S	T	R	V	H	N	P	A	V
Query Conservation																																																											.
Alig confidence																																																											.
Template Conservation
Template Sequence		K	D	K	L	V	V	S	T	S	C	S	L	L	H	T	A	V	D	L	I	N	E	T	K	L	D	D	E	I	K	S	W	X	A	F	A	A	Q	K	V	V	E	V	N	A	L	A	K	A	L	A	G	Q	K	D	E	A	L	F	S	A	N	A	A	A	L	A	S	R	R	S	S	P	R	V	T	N	E	G	V
Template Known Secondary structure		S	S							S	S		G	G	G	S		S		S	T	T			S	S						T	T	B																T	T	T	T																					T	T	T			S	G	G
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	R	L	A	A	I	T	A	Q	D	S	Q	R	A	N	V	Y	E	V	R	A	E	A	Q	R	A	R	F	K	L	P	A	W	P	T	T	T	I	G	S	F	P	Q	T	T	E	I	R	T	L	R	L	D	F	K	K	G	N	L	D	A	N	N	Y	R	T	G	I	A	E	H	I	K	Q	A	I	V	E	Q
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	K	A	A	A	A	L	K	G	S	D	H	R	R	A	T	N	V	S	A	R	L	D	A	Q	Q	K	K	L	N	L	P	I	L	P	T	T	T	I	G	S	F	P	Q	T	V	E	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	Y	V	K	A	I	K	E	E	I	K	K	V	V	D	L	Q
Template Known Secondary structure		G	T	T	T	T	T	T	S	S				S		S			T											T				S	S		B				S						S				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.														.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	L	G	L	D	V	L	V	H	G	E	A	E	R	N	D	M	V	E	Y	F	G	E	H	L	D	G	F	V	F	T	Q	N	G	W	V	Q	S	Y	G	S	R	C	V	K	P	P	I	V	I	G	D	I	S	R	P	A	P	I	T	V	E	W	A	K	Y	A	Q	S	L	T	D	K	P	V	K	G	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	L	D	I	D	V	L	V	H	G	E	P	E	R	N	D	X	V	E	Y	F	G	E	Q	L	S	G	F	A	F	T	A	N	G	W	V	Q	S	Y	G	S	R	C	V	K	P	P	V	I	Y	G	D	V	S	R	P	K	A	X	T	V	F	W	S	A	X	A	Q	S	X	T	S	R	P	X	K	G	X	L
Template Known Secondary structure			T	T			S	S	B					T	T		S	S	T	T						T	S	S	S					S	S							T	T										S						S		S	S	T							T	T	S		S	S		B
Template Predicted Secondary structure
Template SS confidence
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	P	V	T	I	L	C	W	S	F	P	R	E	D	V	S	R	E	T	I	A	K	Q	I	A	L	A	L	R	D	E	V	A	D	L	E	A	A	G	I	G	I	I	Q	I	D	E	P	A	L	R	E	G	L	P	L	R	R	S	D	W	D	A	Y	L	Q	W	G	V	E	A	F	R	I	N	A	A	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	G	P	V	T	I	L	N	W	S	F	V	R	N	D	Q	P	R	H	E	T	C	Y	Q	I	A	L	A	I	K	D	E	V	E	D	L	E	K	G	G	I	G	V	I	Q	I	D	E	A	A	L	R	E	G	L	P	L	R	K	S	E	H	A	F	Y	L	D	W	A	V	H	S	F	R	I	T	N	C	G	V
Template Known Secondary structure										S	S				T	T	S																							T	T									T	T	S	S	T	T			S	S	G	G	G																	T	T
Template Predicted Secondary structure
Template SS confidence
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
		633	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.		680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		K	D	D	T	Q	I	H	T	H	M	C	Y	C	E	F	N	D	I	M	D	S	I	A	A	L	D	A	D	V	I	T	I	E	T	S	R	S	D	M	E	L	L	E	S	F	E	E	.	F	D	Y	P	N	E	I	G	P	G	V	Y	D	I	H	S	P	N	V	P	S	V	E	W	I	E	A	L	L	K	K	A
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		Q	D	S	T	Q	I	H	T	H	X	C	Y	S	H	F	N	D	I	I	H	S	I	I	D	X	D	A	D	V	I	T	I	E	N	S	R	S	D	E	K	L	L	S	V	F	R	E	G	V	K	Y	G	A	G	I	G	P	G	V	Y	D	I	H	S	P	R	I	P	S	S	E	E	I	A	D	R	V	N	K	X
Template Known Secondary structure			S	S	S									S			G	G	G						T	S			S							S	S	S		S	S	G	G	G	G	T	T	T	T	T				S							S		T	T	S		S											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		639	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
		712	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	R	I	P	A	E	R	L	W	V	N	P	D	C	G	L	K	T	R	G	W	P	E	T	R	A	A	L	A	N	M	V	Q	A	A	Q	N	L	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	V	L	E	Q	N	I	L	W	V	N	P	D	C	G	L	K	T	R	K	Y	T	E	V	K	P	A	L	K	N	X	V	D	A	A	K	L	I	R	S
Template Known Secondary structure		T	T	T	S		S	S	S	B		B			S	S		S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.