Job Description P25665 Confidence 100.00% Date Thu Jan 5 11:42:13 GMT 2012 Rank 1 Aligned Residues 725 % Identity 42% Template c1t7lA_ PDB info PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate-- PDBTitle: crystal structure of cobalamin-independent methionine2 synthase from t. maritima Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	I	L	N	H	T	L	G	F	P	R	V	G	L	R	R	E	L	K	K	A	Q	E	S	Y	W	A	G	N	S	T	R	E	E	L	L	A	V	G	R	E	L	R	A	R	H	W	D	Q	Q	K	Q	A	G	I	D	L	L	P	V	G	D	F	A	W	Y	D	H	V	L	T	T	S	L	L	L	G	N	V
Query Conservation
Alig confidence				.																																								.
Template Conservation				.																																								.
Template Sequence		F	T	.	K	A	Y	A	F	G	F	P	K	I	G	E	K	R	E	F	K	K	A	L	E	D	F	W	K	G	K	I	T	E	E	Q	F	E	E	E	M	N	K	.	L	R	M	Y	M	V	E	N	Y	R	K	N	V	D	V	I	P	S	N	E	L	S	Y	Y	D	F	V	L	D	T	A	V	M	V	G	A	V
Template Known Secondary structure				.									S	S		T	T													T	S	S												.														S	S				S				S	S										T	T
Template Predicted Secondary structure				.																																								.
Template SS confidence
		0	.		.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	R	H	Q	N	K	D	G	S	V	D	I	D	T	L	F	R	I	G	R	G	R	A	P	T	G	E	P	A	A	A	A	E	M	T	K	W	F	N	T	N	Y	H	Y	M	V	P	E	F	V	K	G	Q	Q	F	K	L	T	W	T	Q	L	L	D	E	V	D	E	A	L	A	L	G	H	K	V	K	P	V
Query Conservation
Alig confidence											.	.	.													.	.	.	.	.	.	.																							.
Template Conservation											.	.	.													.	.	.	.	.	.	.																							.
Template Sequence		P	E	R	F	G	E	Y	R	G	.	.	.	L	S	T	Y	F	D	M	A	R	G	G	K	.	.	.	.	.	.	.	A	L	E	M	T	K	F	F	N	T	N	Y	H	Y	L	V	P	E	I	E	T	E	.	E	F	Y	L	L	E	N	K	P	L	E	D	Y	L	F	F	K	S	K	G	I	E	T	A	P	W
Template Known Secondary structure			G	G	G		S			S	.	.	.									S	S	T	T	.	.	.	.	.	.	.								T	T	S	S							B				S	.					S													T	T	T
Template Predicted Secondary structure											.	.	.													.	.	.	.	.	.	.																							.
Template SS confidence
		78	.	80	.	.	.	.	.	.				.	.	.	90	.	.	.	.	.	.	.	.								.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		L	L	G	P	V	T	W	L	W	L	G	K	.	.	.	.	V	K	G	E	Q	F	D	R	L	S	L	L	N	D	I	L	P	V	Y	Q	Q	V	L	A	E	L	A	K	R	G	I	E	W	V	Q	I	D	E	P	A	L	V	L	E	L	P	Q	A	W	L	D	A	Y	K	P	A	Y	D	A	L	Q	G	Q	V
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.																																																													.
Template Conservation																																																																														.
Template Sequence		V	I	G	P	F	T	F	L	Y	L	S	K	R	N	G	E	W	I	R	R	P	N	Q	M	E	K	L	L	E	S	L	V	S	V	Y	K	E	V	F	E	K	L	V	E	N	G	C	K	E	I	L	V	N	E	P	A	F	V	C	D	L	E	K	A	H	W	D	L	I	L	N	V	Y	R	E	L	.	S	E	F
Template Known Secondary structure											T				T	T					S																									T	T									G	G	G	G	S																T	T	.	T	T	S
Template Predicted Secondary structure																																																																														.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.		.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		K	L	L	L	T	T	Y	F	E	G	V	T	P	N	L	D	T	I	T	A	L	P	V	Q	G	L	H	V	D	L	V	H	G	K	D	D	V	A	E	L	H	K	.	R	L	P	S	D	W	L	L	S	A	G	L	I	N	G	R	N	V	W	R	A	D	L	T	E	K	Y	A	Q	I	K	D	I	V	G	K	R
Query Conservation																																												.
Alig confidence													.																															.																																		.	.	.
Template Conservation													.																																																																	.	.	.
Template Sequence		P	L	T	V	F	T	Y	Y	D	S	V	.	S	D	Y	E	A	C	V	S	L	P	V	K	R	L	H	F	D	F	V	S	N	E	E	N	L	K	N	L	E	K	H	G	F	P	E	D	K	K	L	V	A	G	V	I	N	G	R	Q	P	W	K	V	D	L	R	K	V	A	S	L	V	E	K	L	.	.	.	G
Template Known Secondary structure									S	S			.	S							T	S	S		S							S	S		S													T	T	S									S	S			B															.	.	.	T
Template Predicted Secondary structure													.																																																																	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300				.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	W	V	A	S	S	C	S	L	L	H	S	P	I	D	L	S	V	E	T	R	L	D	A	E	V	K	S	W	F	A	F	A	L	Q	K	C	H	E	L	A	L	L	R	D	A	L	N	S	G	D	T	A	A	L	A	E	W	S	A	P	I	Q	A	R	R	H	S	T	R	V	H	N	P	A	V	E	K	R
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.
Template Sequence		A	S	A	I	S	N	S	C	P	L	F	H	L	P	V	T	L	E	L	E	N	N	L	P	G	G	L	K	E	K	L	A	F	A	K	E	K	L	E	E	L	K	M	L	K	D	F	L	E	G	K	T	F	D	L	P	.	.	.	.	.	.	.	.	N	V	S	F	E	D	F	A	V	D	L	Q	A	V	E	R
Template Known Secondary structure			S					S	S		G	G	G	S		S		S	T	T			S	S	S	T	T	T	G	G	G	B																		T	T	S						.	.	.	.	.	.	.	.					T	T	T	T
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.									.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	I	T	A	Q	D	S	Q	R	A	N	V	Y	E	V	R	A	E	A	Q	R	A	R	F	K	L	P	A	W	P	T	T	T	I	G	S	F	P	Q	T	T	E	I	R	T	L	R	L	D	F	K	K	G	N	L	D	A	N	N	Y	R	T	G	I	A	E	H	I	K	Q	A	I	V	E	Q	E	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	N	L	P	E	D	S	F	R	R	E	K	E	Y	T	E	R	D	R	I	Q	R	E	R	L	N	L	P	L	F	P	T	T	T	I	G	S	F	P	Q	T	P	E	V	R	K	M	R	S	K	Y	R	K	G	E	I	S	K	E	E	Y	E	A	F	I	K	E	Q	I	K	K	A	I	E	L	Q	E	E	I
Template Known Secondary structure				T			G	G	G	T	S		S	S																	S	S		B				S																	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	D	V	L	V	H	G	E	A	E	R	N	D	M	V	E	Y	F	G	E	H	L	D	G	F	V	F	T	Q	N	G	W	V	Q	S	Y	G	S	R	C	V	K	P	P	I	V	I	G	D	I	S	R	P	A	P	I	T	V	E	W	A	K	Y	A	Q	S	L	T	D	K	P	V	K	G	M	L	T	G	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	D	V	L	V	H	G	E	F	E	R	T	D	M	V	E	F	F	A	E	K	L	N	G	I	A	T	T	Q	N	G	W	V	L	S	Y	G	S	R	C	Y	R	P	P	I	I	Y	G	T	V	T	R	P	E	P	M	T	L	K	E	I	T	Y	A	Q	S	L	T	E	K	P	V	K	G	M	L	T	G	P
Template Known Secondary structure		T		S	S	B					T	T		S	S							T	T	S							S	S							T	T																S		S	S										T		S	S		B
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
		556	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	I	L	C	W	S	F	P	R	E	D	V	S	R	E	T	I	A	K	Q	I	A	L	A	L	R	D	E	V	A	D	L	E	A	A	G	I	G	I	I	Q	I	D	E	P	A	L	R	E	G	L	P	L	R	R	S	D	W	D	A	Y	L	Q	W	G	V	E	A	F	R	I	N	A	A	V	A	K	D	D
Query Conservation
Alig confidence																																																																																.
Template Conservation																																																																																.
Template Sequence		V	T	I	M	S	W	S	Y	Y	R	E	D	I	P	E	R	E	I	A	Y	Q	I	A	L	A	I	N	E	E	V	K	D	L	E	E	A	G	I	K	I	V	Q	I	D	E	P	A	F	R	E	K	A	P	I	K	K	S	K	W	P	E	Y	F	E	W	A	I	N	A	F	N	L	A	A	N	A	R	P	.	E
Template Known Secondary structure							T	S				S	S	S																							T	T									T					T	S		S	S	G	G	G																T				T	.	T
Template Predicted Secondary structure																																																																																.
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.		.
		636	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.		.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		T	Q	I	H	T	H	M	C	Y	C	E	F	N	D	I	M	D	S	I	A	A	L	D	A	D	V	I	T	I	E	T	S	R	S	D	M	E	L	L	E	S	F	E	E	F	D	Y	.	P	N	E	I	G	P	G	V	Y	D	I	H	S	P	N	V	P	S	V	E	W	I	E	A	L	L	K	K	A	A	K	R
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		T	Q	I	H	A	H	M	C	Y	S	D	F	N	E	I	I	E	Y	I	H	Q	L	E	F	D	V	I	S	I	E	A	S	R	S	K	G	E	I	I	S	A	F	E	N	F	K	G	W	I	K	Q	I	G	V	G	V	W	D	I	H	S	P	A	V	P	S	I	N	E	M	R	E	I	V	E	R	V	L	R	V
Template Known Secondary structure		S									S			T	T	T					T	T	S			S							T	T	T	T	T	G	G	G					T	S	T	T			S							S		T	T	S		S															T	T	T
Template Predicted Secondary structure
Template SS confidence
		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.
		715	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	P	A	E	R	L	W	V	N	P	D	C	G	L	K	T	R	G	W	P	E	T	R	A	A	L	A	N	M	V	Q	A	A	Q	N	L	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	K	E	L	I	W	I	N	P	D	C	G	L	K	T	R	N	W	D	E	V	I	P	S	L	R	N	M	V	A	L	A	K	E	M	R	E
Template Known Secondary structure		S		G	G	G						S	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		693	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730