Job Description P33924 Confidence 78.48% Date Thu Jan 5 11:52:48 GMT 2012 Rank 40 Aligned Residues 173 % Identity 10% Template d2gufa1 SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 1.95

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		667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	Y	T	L	G	A	Y	A	G	W	E	H	Q	N	G	A	Y	V	D	G	V	V	K	V	D	R	F	A	N	T	I	H	G	K	M	S	N	G	A	T	A	F	G	D	Y	N	S	N	G	A	G	A	H	V	E	S	G	F	R	W	V	D	G	L	W	S	V	R	P	Y	L	A	F	T	G	F	T	T	D
Query Conservation
Alig confidence																	.																														.																	.	.	.	.
Template Conservation																	.																														.																	.	.	.	.
Template Sequence		K	S	K	Q	W	E	G	A	F	E	G	L	T	A	G	.	V	N	W	R	I	S	G	Y	R	N	D	V	S	D	L	I	D	Y	D	D	H	T	L	K	Y	Y	N	E	G	.	K	A	R	I	K	G	V	E	A	T	A	N	F	D	T	G	.	.	.	.	P	L	T	H	T	V	S	Y	D	Y	V	D	A	R
Template Known Secondary structure															T	T	.																				T	T	T	T							.																T	.	.	.	.	T
Template Predicted Secondary structure																	.																														.																	.	.	.	.
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.		.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.		.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.					.	.	.	.	.	.	480	.	.	.	.	.	.	.
		747	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	D	Y	T	L	S	N	G	M	R	A	D	V	G	N	T	R	I	L	R	A	E	A	G	T	A	V	S	Y	H	M	D	L	Q	N	G	T	T	L	E	P	W	L	K	A	A	V	R	Q	E	Y	A	D	S	N	Q	V	K	V	N	D	D	G	K	F	N	N	D	V	A	G	T	S	G	V	Y	Q	A	G
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Sequence		N	A	I	T	.	.	.	.	.	.	.	.	D	T	P	L	L	R	R	A	K	Q	Q	V	K	Y	Q	L	D	W	Q	L	.	.	.	.	.	.	.	.	.	Y	D	F	D	W	G	I	T	Y	Q	Y	L	G	T	R	Y	D	K	D	Y	S	S	Y	P	Y	Q	T	V	K	M	G	G	V	S	L	W	D	L	A
Template Known Secondary structure			T	T	T	.	.	.	.	.	.	.	.			B		T	T			S												.	.	.	.	.	.	.	.	.	T	T																			S	S	S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		488	.	490	.									.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.										.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
		827	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	S	S	F	T	P	T	L	S	G	H	L	S	V	S	Y	G	N	G	A	G	V	E	S	P	W	N	T	Q	A	G	V	V	W	T	F
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		V	A	Y	P	V	T	S	H	L	T	V	R	G	K	I	A	.	N	L	F	D	K	D	Y	A	G	R	E	Y	T	L	S	G	S	Y	T	F
Template Known Secondary structure						S	S	S	S									.	S	T	T
Template Predicted Secondary structure																		.
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.		.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions