Job Description P33924 Confidence 99.21% Date Thu Jan 5 11:52:48 GMT 2012 Rank 7 Aligned Residues 150 % Identity 21% Template d1p4ta_ SCOP info Transmembrane beta-barrels OMPA-like Outer membrane protein Resolution 2.55

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		678	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	Q	N	G	A	Y	V	D	G	V	V	K	V	D	R	F	A	N	T	I	H	G	K	M	S	N	G	A	T	A	F	G	D	Y	N	S	N	G	A	G	A	H	V	E	S	G	F	R	W	V	D	G	L	W	S	V	R	P	Y	L	A	F	T	G	F	T	T	D	G	Q	D	Y	T	L	S	N	G	M	R
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.																.	.							.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.																.	.							.	.	.	.											.	.	.	.	.	.	.	.
Template Sequence		E	G	A	S	G	F	Y	V	Q	A	D	A	A	H	A	K	A	S	S	S	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	K	G	F	S	P	R	I	S	A	G	Y	R	I	.	.	N	D	L	R	F	A	.	.	.	.	V	D	Y	T	R	Y	K	N	Y	K	.	.	.	.	.	.	.	.
Template Known Secondary structure																					S	S		.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	T	T					.	.	.	.									S	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.																.	.							.	.	.	.											.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.														.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.
		758	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	V	G	N	T	R	I	L	R	A	E	A	G	T	A	V	S	Y	H	M	D	L	Q	N	G	T	T	L	E	P	W	L	K	A	A	V	R	Q	E	Y	A	D	S	N	Q	V	K	V	N	D	D	G	K	F	N	N	D	V	A	G	T	S	G	V	Y	Q	A	G	I	R	S	S	F	T	P	T	L	S	G
Query Conservation
Alig confidence		.	.																								.	.														.	.	.	.	.
Template Conservation		.	.																								.	.														.	.	.	.	.
Template Sequence		.	.	A	P	S	T	D	F	K	L	Y	S	I	G	A	S	A	I	Y	D	F	D	T	Q	S	.	.	P	V	K	P	Y	L	G	A	R	L	S	L	N	.	.	.	.	.	R	A	S	V	D	L	G	G	S	D	S	F	S	Q	T	S	I	G	L	G	V	L	T	G	V	S	Y	A	V	T	P	N	V	D	L
Template Known Secondary structure		.	.			S	S																		S	S	.	.	S													.	.	.	.	.							T	T																							T	T
Template Predicted Secondary structure		.	.																								.	.														.	.	.	.	.
Template SS confidence
				54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		838	.	840	.	.	.	.	.						.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.
Predicted Secondary structure										.	.	.	.	.
Query SS confidence										.	.	.	.	.
Query Sequence		H	L	S	V	S	Y	G	N	.	.	.	.	.	G	A	G	V	E	S	P	W	N	T	Q	A	G	V	V	W	T	F
Query Conservation										.	.	.	.	.
Alig confidence										.	.	.	.	.
Template Conservation
Template Sequence		D	A	G	Y	R	Y	N	Y	I	G	K	V	N	T	V	K	N	V	R	S	G	E	L	S	A	G	V	R	V	K	F
Template Known Secondary structure														T	T
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions