Job Description P33924 Confidence 93.87% Date Thu Jan 5 11:52:48 GMT 2012 Rank 30 Aligned Residues 529 % Identity 17% Template d1daba_ SCOP info Single-stranded right-handed beta-helix Pectin lyase-like Virulence factor P.69 pertactin Resolution 2.50

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	T	V	E	Y	G	E	T	V	D	G	V	V	L	E	K	D	I	Q	L	V	Y	G	T	A	N	N	T	K	I	N	P	G	G	E	Q	H	I	K	E	F	G	V	S	N	N	T	E	I	N	G	G	Y	Q	Y	I	E	M	N	G	A	A	E	Y	S	V	L	N	D	G	Y	Q	I	V	Q	M	G	G	A
Query Conservation
Alig confidence																																																																		.	.	.	.
Template Conservation																																																																		.	.	.	.
Template Sequence		Q	S	I	V	K	T	G	E	R	Q	H	G	I	H	I	Q	G	S	D	P	G	G	V	R	T	A	S	G	T	T	I	K	V	S	G	R	Q	A	Q	G	I	L	L	E	N	P	A	A	E	L	Q	F	R	N	G	S	V	T	S	S	G	Q	L	S	.	.	.	.	D	D	G	I	R	R	F	L	G	T	V	T
Template Known Secondary structure								S	T	T			S					T	T	S									S							S	T	T			S														S							S			B	.	.	.	.		S	S	S	S		B			S
Template Predicted Secondary structure																																																																		.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	Q	T	T	L	N	N	G	V	L	Q	V	Y	G	A	A	N	D	T	T	I	K	G	G	R	L	I	V	E	K	D	G	G	A	V	F	V	A	I	E	K	G	G	L	L	E	V	K	E	G	G	F	A	F	A	V	D	Q	K	A	G	G	A	I	K	T	T	T	R	A	M	E	V	F	G	T	N	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	A	G	K	L	V	A	D	H	A	T	L	A	N	V	G	D	T	W	D	D	D	G	I	A	L	Y	V	A	G	E	Q	A	Q	A	S	I	A	D	S	T	L	Q	G	A	G	G	V	Q	I	E	R	G	A	N	V	T	V	Q	R	S	A	I	V	D	G	G	L	H	I	G	A	L	Q	S	L	Q	P	E
Template Known Secondary structure											S							S		T	T	T	S									S	T	T							S					S	T	T						T	T							S					S	B							S	S			S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	F	D	I	K	N	G	I	A	N	N	M	L	L	E	N	G	G	S	L	R	V	E	E	N	D	F	A	Y	N	T	T	V	D	S	G	G	L	L	E	V	M	D	G	G	T	V	T	G	V	D	K	K	A	G	G	K	L	I	V	S	T	N	A	L	E	V	S	G	P	N	S	K	G	Q	F	S	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	P	P	S	R	V	V	L	R	D	T	N	V	T	A	V	P	A	S	G	A	P	A	A	V	S	V	L	G	A	S	E	L	T	L	D	G	G	H	I	T	G	G	R	A	A	G	V	A	A	M	Q	G	A	V	V	H	L	Q	R	A	T	I	R	R	G	D	A	L	A	G	G	A	V	P	G	G	A	V
Template Known Secondary structure			S									S							T	T	S			S							S	S														S	S							S	S												S						S	S	S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	V	S	K	N	Y	E	L	D	D	G	S	G	L	I	V	M	E	D	T	Q	A	I	D	T	I	L	D	K	H	A	T	M	Q	S	L	G	K	D	T	G	T	K	V	Q	A	N	A	V	Y	D	L	G	R	S	Y	Q	N	G	S	I	T	Y	S	S	K	A	I	S	E	N	M	V	I	N	N	G	R	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	G	G	A	V	P	G	G	F	G	P	G	G	F	G	P	V	L	D	G	W	Y	G	V	D	V	S	G	S	S	V	E	L	A	Q	S	I	V	E	A	P	E	L	G	A	A	I	R	V	G	R	G	A	R	V	T	V	P	G	G	S	L	S	A	P	H	G	N	V	I	E	T	G	G	A	R	R	F	A	P
Template Known Secondary structure			S					S	S	S			S	S				S	S		S								S	S						S							S	S								T	T							S	S																S	S			S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.						.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.
Query Sequence		N	V	W	A	G	T	M	V	N	V	S	V	R	G	N	D	G	I	L	E	V	M	K	P	Q	I	N	Y	A	P	A	M	L	V	G	K	V	V	V	S	E	G	A	S	F	R	T	H	G	A	V	D	T	S	K	A	D	.	.	.	.	.	V	S	L	E	N	S	V	W	T	I	I	A	D	I	T	T	T	N
Query Conservation																																																											.	.	.	.	.
Alig confidence																																																											.	.	.	.	.
Template Conservation
Template Sequence		Q	A	A	P	L	S	I	T	L	Q	A	G	A	H	A	Q	G	K	A	L	L	Y	R	V	L	P	E	P	V	K	L	T	L	T	G	G	A	D	A	Q	G	D	I	V	A	T	E	L	P	S	I	P	G	T	S	I	G	P	L	D	V	A	L	A	S	Q	A	R	W	T	G	A	T	R	A	V	D	S	L	S
Template Known Secondary structure		S	S									T	T													S	S									T	T											S		S	S	S		G	G	G	S									T	T							B	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	T	L	L	N	L	A	N	L	A	M	S	D	A	N	V	I	M	M	D	E	P	V	T	R	S	S	V	T	A	S	A	E	N	F	I	T	L	T	T	N	T	L	S	G	N	G	N	F	Y	M	R	T	D	M	A	N	H	Q	S	D	Q	L	N	V	T	G	Q	A	T	G	D	F	K	I	F	V	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D	N	A	T	W	V	M	T	D	N	S	N	V	G	A	L	R	L	A	S	D	G	S	V	D	F	Q	Q	P	A	E	A	G	R	F	K	V	L	T	V	N	T	L	A	G	S	G	L	F	R	M	N	V	F	A	D	L	G	L	S	D	K	L	V	V	M	Q	D	A	S	G	Q	H	R	L	W	V	R	N
Template Known Secondary structure				S							S											T	T									S	S	T	T																						G	G	G	T													S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		T	G	A	S	P	A	A	G	D	S	L	T	L	V	T	T	.	G	G	G	D	A	A	F	T	L	G	N	A	G	G	V	V	D	I	G	T	Y	E	Y	T	L	L	D	N	G	N	H	S	W	S	L	A	E	N	R	A	Q	I
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		S	G	S	E	P	A	S	A	N	T	L	L	L	V	Q	T	P	L	G	S	A	A	T	F	T	L	A	N	K	D	G	K	V	D	I	G	T	Y	R	Y	R	L	A	A	N	G	N	G	Q	W	S	L	V	G	A	K	A	P	P
Template Known Secondary structure			S				S	S											S	S									S	G	G	G					T	T									S	S	S
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.