Job Description P33924 Confidence 82.92% Date Thu Jan 5 11:52:48 GMT 2012 Rank 37 Aligned Residues 182 % Identity 15% Template d1by5a_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.60

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		665	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	D	S	Y	T	L	G	A	Y	A	G	W	E	H	Q	N	G	A	Y	V	D	G	V	V	K	V	D	R	F	A	N	T	I	H	G	K	M	S	N	G	A	T	A	F	G	D	Y	N	S	N	G	A	G	A	H	V	E	S	G	F	R	W	V	D	G	L	W	S	V	R	P	Y	L	A	F	T	G	F	T
Query Conservation
Alig confidence																			.																																																	.	.	.
Template Conservation																			.																																																	.	.	.
Template Sequence		K	G	K	Q	Y	E	V	G	V	K	Y	V	P	E	D	R	P	.	I	V	V	T	G	A	V	Y	N	L	T	K	T	N	N	L	M	A	D	P	E	G	S	F	F	S	V	E	G	G	E	I	R	A	R	G	V	E	I	E	A	K	R	P	L	S	A	S	.	.	.	V	N	V	V	G	S	Y	T	Y	T	D
Template Known Secondary structure															S	S	S		.																				S	S			S																					S	S	S	S	.	.	.
Template Predicted Secondary structure																			.																																																	.	.	.
Template SS confidence
		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.		.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.				.	.	.	.	.	.	.	.	590	.	.
		745	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	G	Q	D	Y	T	L	S	N	G	M	R	A	D	V	G	N	T	R	I	L	R	A	E	A	G	T	A	V	S	Y	H	M	D	L	Q	N	G	T	T	L	E	P	W	L	K	A	A	V	R	Q	E	Y	A	D	S	N	Q	V	K	V	N	D	D	G	K	F	N	N	D	V	A	G	T	S	G	V	Y	Q
Query Conservation
Alig confidence																									.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template Sequence		A	E	Y	T	T	D	T	T	Y	K	G	N	T	P	A	Q	V	P	K	H	M	A	S	.	.	.	.	L	W	A	D	Y	T	F	F	D	G	P	L	S	G	L	T	L	G	T	G	G	R	Y	T	G	S	S	Y	G	D	P	A	.	.	.	.	.	.	.	.	.	N	S	F	K	V	G	S	Y	T	V	V	D
Template Known Secondary structure								T	T	T	T	T				T	T			S					.	.	.	.									S	S	T	T	T	T															S	S	T	T	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure																									.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.					.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.										.	.	650	.	.	.	.	.	.	.	.	.
		825	.	.	.	.	830	.	.	.					.	.	.	.	.	.	840	.	.													.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.
Predicted Secondary structure											.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	G	I	R	S	S	F	T	P	.	.	.	.	T	L	S	G	H	L	S	V	S	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	N	G	A	G	V	E	S	P	W	N	T	Q	A	G	V	V	W	T	F
Query Conservation											.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	V	R	Y	D	L	A	R	V	G	M	A	G	S	N	V	A	L	H	V	N	N	L	F	D	R	E	Y	V	A	S	C	F	N	T	Y	G	C	F	W	G	A	E	R	Q	V	V	A	T	A	T	F	R	F
Template Known Secondary structure								T	T	T	T	T		T	T									S	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions