Job Description P33924 Confidence 99.12% Date Thu Jan 5 11:52:48 GMT 2012 Rank 10 Aligned Residues 134 % Identity 15% Template c3nb3C_ PDB info PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Resolution 19.00 Å

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		679	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	N	G	A	Y	V	D	G	V	V	K	V	D	R	F	A	N	T	I	H	G	K	M	S	N	G	A	T	A	F	G	D	Y	N	S	N	G	A	G	A	H	V	E	S	G	F	R	W	V	D	G	L	W	S	V	R	P	Y	L	A	F	T	G	F	T	T	D	G	Q	D	Y	T	L	S	N	G	M	R	A
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.							.	.	.	.															.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.							.	.	.	.															.	.	.	.	.
Template Sequence		K	D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	H	E	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	A	G	A	F	G	G	Y	Q	V	N	.	P	Y	V	G	F	E	.	.	.	.	M	G	Y	D	W	L	G	R	M	P	Y	A	Y	K	.	.	.	.	.
Template Known Secondary structure			T	T																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	T	T					.	.	.	.															.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.							.	.	.	.															.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																				.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.					40	.	.	.	.	.	.	.	.	.	50	.	.	.
		759	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	G	N	T	R	I	L	R	A	E	A	G	T	A	V	S	Y	H	M	D	L	Q	N	G	T	T	L	E	P	W	L	K	A	A	V	R	Q	E	Y	A	D	S	N	Q	V	K	V	N	D	D	G	K	F	N	N	D	V	A	G	T	S	G	V	Y	Q	A	G	I	R	S	S	F	T	P	T	L	S	G	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																	.	.														.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																	.	.														.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	T	D	.	.	D	L	D	I	Y	T	R	L	G	G	M	V	W	.	.	.	.	.	R	A	D	T	Y	S	N	V	Y	G	K	N	H	D	T	G	V	S	P	V	F	A	G	G	V	E	Y	A	I	T	P	E	I	A	T	R
Template Known Secondary structure		.	.	.	.	.	.	.	.														S	S	S	.	.	S													.	.	.	.	.							S	S	S																						T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																	.	.														.	.	.	.	.
Template SS confidence
										74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.						.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		839	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	V	S	Y	G	N	G	A	G	V	E	S	P	W	N	T	Q	A	G	V	V	W	T	F
Query Conservation
Alig confidence								.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.
Template Sequence		L	E	Y	Q	W	T	.	.	.	.	.	.	.	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure								.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.								.	.	.	.	.	150	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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