Job Description P33924 Confidence 30.49% Date Thu Jan 5 11:52:48 GMT 2012 Rank 50 Aligned Residues 554 % Identity 14% Template c3h09B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:immunoglobulin a1 protease; PDBTitle: the structure of haemophilus influenzae iga1 protease Resolution 1.75 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	S	G	S	V	S	L	C	R	S	A	I	S	V	L	V	A	T	A	L	Y	S	P	I	A	L	A	S	T	V	E	Y	G	E	T	V	D	G	V	V	L	E	K	D	I	Q	L	V	Y	G	T	A	N	N	T	K	I	N	P	G	G	E	Q	H	I	K	E	F	G	V	S	N	N	T	E	I	N	G	G
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence		Q	G	A	G	G	L	F	F	E	.	G	D	Y	E	V	K	G	T	S	D	S	T	T	W	K	G	A	G	V	S	V	A	D	G	K	T	V	T	W	K	V	H	N	P	K	S	D	R	L	A	K	I	G	K	G	T	L	I	V	E	G	K	G	E	N	K	G	S	L	K	V	G	D	G	T	V	I	L	K	Q
Template Known Secondary structure			T	T							.								S	S	T	T		B			S	S						T	T								B			T	T							S	S	S							B	S	B									S
Template Predicted Secondary structure											.
Template SS confidence
		405	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		Y	Q	Y	I	E	M	N	G	A	A	E	Y	S	V	L	N	D	G	Y	.	.	.	.	Q	I	V	Q	M	G	G	A	A	N	Q	T	T	L	N	N	G	V	L	Q	V	Y	G	A	A	N	D	T	T	I	K	G	G	R	L	I	V	E	K	D	G	G	A	V	F	V	A	I	E	K	G	G	L	L	E	V	K
Query Conservation																					.	.	.	.
Alig confidence																					.	.	.	.
Template Conservation
Template Sequence		Q	A	D	A	N	N	K	V	K	A	F	S	Q	V	G	I	V	S	G	R	S	T	V	V	L	N	D	D	K	Q	V	D	P	N	S	I	Y	F	G	F	R	G	G	R	L	D	A	N	G	N	N	L	T	F	E	H	I	R	N	I	D	D	G	A	R	L	V	N	H	N	T	S	K	T	S	T	V	T	I	T
Template Known Secondary structure		B			T	T				B	S		S						S	S							S	S	T	T	S	S		G	G	G					T	T							T	T						S					S	S	T	T								S	S	S
Template Predicted Secondary structure
Template SS confidence
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	G	G	F	A	F	A	V	D	Q	K	A	G	G	A	I	K	T	T	T	R	A	M	E	V	F	G	T	N	R	L	G	Q	F	D	I	K	N	G	I	A	N	N	M	L	L	E	N	G	G	S	L	R	V	E	E	N	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	S	L	I	T	D	P	N	T	I	T	P	Y	N	I	D	A	P	D	E	D	N	P	Y	A	F	R	R	I	K	D	G	G	Q	L	Y	L	N	L	E	N	Y	T	Y	Y	A	L	R	K	G	A	S	T	R	S	E	L	P	K	N	S	G	E	S	N	E	N	W	L	Y	M	G	K	T	S	D	E	A	K
Template Known Secondary structure									G	G	G											S	S		T	T	S						T	T		S	S				T	T	T	T							T	T			T	T	S				S	S	T	T				S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		564	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
								217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	A	Y	N	T	T	V	D	S	G	G	L	L	E	V	M	D	G	G	T	V	T	G	V	D	K	K	A	G	G	K	L	I	V	S	T	N	A	L	E	V	S	G	P	N	S	K	G	Q	F	S	I	K	D	G	V	S	K	N	Y	E	L	D	D	G	S	G	L	I	V	M	E	D	T	Q
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.
Template Conservation
Template Sequence		R	N	V	M	N	H	I	N	N	E	R	M	N	G	F	N	G	Y	F	G	E	E	E	G	K	N	N	G	N	L	N	V	T	F	K	G	K	S	E	Q	N	R	F	L	L	T	G	G	T	N	L	N	G	D	L	K	V	E	K	G	T	L	F	L	S	G	R	P	T	P	H	A	R	D	I	A	G	I	S	S
Template Known Secondary structure												T				B		S			S			T	T	S												S	S	T	T							S					S	S							S															T	T	S
Template Predicted Secondary structure
Template SS confidence
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	D	T	I	L	D	K	H	A	T	M	Q	S	L	G	K	D	T	G	T	K	V	Q	A	N	A	V	Y	D	L	G	R	S	Y	Q	N	G	S	I	T	Y	S	S	K	A	I	S	E	N	M	V	I	N	N	G	R	A	N	V	W	A	G	T	M	V	N	V	S	V	R	G	N	D	G	I	L	E	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	K	D	Q	H	F	A	E	N	N	E	V	V	V	E	D	D	W	I	N	R	N	F	K	A	T	N	I	N	V	T	N	N	A	T	L	Y	S	G	R	N	V	A	N	I	T	S	N	I	T	A	S	D	N	A	K	V	H	I	G	Y	K	A	G	D	T	V	C	V	R	S	D	Y	T	G	Y	V	T	C
Template Known Secondary structure		S				G	G	G		G	G	G					T	T																T	T							T	T												T	T						S	B		T	T								T	T	T
Template Predicted Secondary structure
Template SS confidence
		724	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		K	P	Q	I	N	Y	A	P	A	M	L	V	G	K	V	V	V	S	E	G	A	S	F	R	T	H	G	A	V	D	T	S	K	A	D	V	S	L	E	N	S	V	W	T	I	I	A	D	I	T	T	T	N	Q	N	T	L	L	N	L	A	N	L	A	M	S	D	A	N	V	I	M	M	D	E	P	V	T	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	T	D	K	L	S	D	K	A	L	N	S	F	N	A	T	N	V	S	G	N	V	N	L	S	G	N	A	N	F	V	L	G	K	A	N	L	F	G	T	I	S	G	T	G	N	S	Q	V	R	L	T	E	N	S	H	W	H	L	T	G	D	S	N	V	N	Q	L	N	L	D	K	G	H	I	H	L	N	A	Q
Template Known Secondary structure				S								T	T	S							S						T	T						S	B					S						T	T							T	T						S	S																S	S	S
Template Predicted Secondary structure
Template SS confidence
		804	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	T	A	S	A	E	N	F	I	T	L	T	T	N	T	L	S	G	N	G	N	F	Y	M	R	T	D	M	A	N	H	Q	S	D	Q	L	N	V	T	G	Q	A	T	G	D	F	K	I	F	V	T	D	T	G	A	S	P	A	A	G	D	S	L	T	L	V	T	T	G	G	G	D	A	A	F	T	L	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	D	A	N	K	V	T	T	Y	N	T	L	T	V	N	S	L	S	G	N	G	S	F	Y	Y	L	T	D	L	S	N	K	Q	G	D	K	V	V	V	T	K	S	A	T	G	N	F	T	L	Q	V	A	D	K	T	G	E	P	T	K	N	E	L	T	L	F	D	A	S	N	A	T	R	N	N	L	N	V	S	L
Template Known Secondary structure				T	T	S																								G	G	G	T																						S	S					S									T	T	S	B		T	T
Template Predicted Secondary structure
Template SS confidence
		884	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.
		531	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	G	V	V	D	I	G	T	Y	E	Y	T	L	L	D	N	G	N	H	S	W	S	L	A	E	N
Query Conservation
Alig confidence																.
Template Conservation																.
Template Sequence		V	G	N	T	V	D	L	G	A	W	K	Y	K	L	.	R	N	V	N	G	R	Y	D	L	Y	N	P
Template Known Secondary structure						S	S	G	G	G						.				T	T
Template Predicted Secondary structure																.
Template SS confidence
		964	.	.	.	.	.	970	.	.	.	.	.	.	.		.	.	980	.	.	.	.	.	.	.	.	.