Job Description P33924 Confidence 2.66% Date Thu Jan 5 11:52:48 GMT 2012 Rank 99 Aligned Residues 207 % Identity 11% Template c2y0kA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:pyroglutatmate porin opdo; PDBTitle: crystal structure of pseudomonas aeruginosa opdo Resolution 2.30 Å

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		631	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.						660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.
Query SS confidence																															.	.	.	.	.
Query Sequence		G	I	D	S	R	F	S	R	E	E	S	S	T	I	R	G	L	I	F	G	Y	S	H	S	D	I	G	F	D	.	.	.	.	.	R	G	G	K	G	N	I	D	S	Y	T	L	G	A	Y	A	G	W	E	H	Q	N	G	A	Y	V	D	G	V	V	K	V	D	R	F	A	N	T	I	H	G	K	M	S	N	G
Query Conservation																															.	.	.	.	.
Alig confidence																															.	.	.	.	.																																							.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		G	A	L	L	D	V	Q	E	I	D	G	L	T	L	R	G	A	H	L	D	R	N	K	L	N	S	S	S	D	Y	Q	V	F	S	A	N	R	I	G	G	R	S	D	A	F	D	F	A	G	G	D	Y	R	L	T	P	A	L	T	A	S	L	H	Q	G	R	L	K	D	I	Y	R	.	.	.	.	.	.	.	.
Template Known Secondary structure										S	S	S														T	T		S	S		B					T	T	T					S											S	S	S	S											T	T	T			.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		706	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.				.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		A	T	A	F	G	D	Y	N	S	N	G	A	G	A	H	V	E	S	G	F	R	W	V	D	G	L	W	S	V	R	P	Y	L	A	F	T	G	F	T	T	D	G	Q	D	Y	T	L	S	N	.	.	.	G	M	R	A	D	V	G	N	T	R	I	L	R	A	E	A	G	T	A	V	S	Y	H	M	D	L	Q	N
Query Conservation																																																			.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.															.																							.	.	.											.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.															.																																				.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	Q	T	F	A	G	L	V	H	T	L	D	L	G	R	.	S	L	K	S	D	L	R	F	A	R	A	S	E	D	G	G	F	R	E	L	D	N	R	A	F	G	A	L	F	S	L	R	L	G	A	.	.	.	.	.	H	A	V	A	A	G	Y	Q	R	I	S	G	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.															.															T	T	S																	T	T	.	.	.	.	.												S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.															.																																				.	.	.	.	.
Template SS confidence
														203	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.						.	.	.	.	.	.	.	.	260	.	.	.	.
		783	.	.	.	.	.																							.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.									.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Query Sequence		G	T	T	L	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	L	K	A	A	V	R	Q	E	Y	A	D	S	N	Q	V	.	.	.	.	.	.	.	.	K	V	N	D	D	G	K	F	N	N	D	V	A	G	T	S	G	V	Y	Q	A	G	I	R	S	S	F	T
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	P	Y	P	Y	I	A	G	S	D	P	Y	L	V	N	F	I	Q	I	G	D	F	G	N	V	D	E	R	S	W	Q	L	R	Y	D	Y	D	F	G	A	L	G	L	P	G	L	S	F	M	S	R	Y	V	S	G	D	N	V	A	R	G	A	A	N	D	G	K	E	W	E	R	N	T	D	L	G	Y	V	V	Q
Template Known Secondary structure		S					B	T	T	S					T	T			S	S					S	T	T													T	T	T	T		T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
						833	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	P	T	L	S	G	H	L	S	V	S	Y	G	N	G	A	G	V	E	S	P	W	N	T	Q	A	G	V	V	W	T	F
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		S	G	P	L	K	N	L	G	V	K	W	R	N	A	T	V	R	S	N	F	A	N	D	L	D	E	N	R	L	I	L	S	Y	S	L
Template Known Secondary structure		S	S	T	T	T	T													S	S	S
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions