Job Description P33924 Confidence 3.00% Date Thu Jan 5 11:52:48 GMT 2012 Rank 91 Aligned Residues 205 % Identity 9% Template c2odjA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa Resolution 2.90 Å

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		628	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	L	G	I	D	S	R	F	S	R	E	E	S	S	T	I	R	G	L	I	F	G	Y	S	H	S	D	I	G	F	D	R	G	G	K	G	N	I	D	S	Y	T	L	G	A	Y	A	G	W	E	H	Q	N	G	A	Y	V	D	G	V	V	K	V	D	R	F	A	N	T	I	H	G	K	M	S	N	G	A	T
Query Conservation
Alig confidence														.	.	.														.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Conservation														.	.	.														.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Sequence		D	F	I	G	G	R	Y	A	I	T	D	N	.	.	.	L	S	A	S	L	Y	G	A	E	L	E	D	I	.	.	.	.	.	.	.	.	.	.	Y	R	Q	Y	Y	L	N	S	N	Y	T	I	P	L	A	S	D	Q	S	L	G	F	D	F	N	I	Y	R	T	N	D	E	.	.	.	.	.	.	.	G	K	A
Template Known Secondary structure										S	S	S	S	.	.	.											T	T	T	.	.	.	.	.	.	.	.	.	.																T	T																.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure														.	.	.														.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.											210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.								.	.	.
		708	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.													750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	G	D	Y	N	S	N	G	A	G	A	H	V	E	S	G	F	R	W	V	D	G	L	W	S	V	R	P	Y	L	A	F	T	G	F	T	T	D	G	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	L	S	N	G	M	R	A	D	V	G	N	T	R	I	L	R	A	E	A	G	T	A	V	S
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.							.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.							.	.	.	.
Template Sequence		K	A	G	D	I	S	N	T	T	W	S	L	A	A	A	Y	T	L	.	.	.	.	D	A	H	T	F	T	.	.	.	.	L	A	Y	Q	K	V	H	G	D	Q	P	F	D	Y	I	G	F	G	S	I	F	L	A	N	S	V	Q	Y	S	D	F	N	G	P	G	E	K	S	W	Q	A	R	Y	D	L	N	L	A
Template Known Secondary structure		S	S																	.	.	.	.	T	T					.	.	.	.								S	S	S											S	S	T	T			S	S						T	T												T	T
Template Predicted Secondary structure																				.	.	.	.							.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.					.	.	.	.	.	.					.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		776	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.					.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.
Predicted Secondary structure																																																											.	.	.	.
Query SS confidence																																																											.	.	.	.
Query Sequence		Y	H	M	D	L	Q	N	G	T	T	L	E	P	W	L	K	A	A	V	R	Q	E	Y	A	D	S	N	Q	V	K	V	N	D	D	G	K	F	N	N	D	V	A	G	T	S	G	V	Y	Q	A	G	I	R	S	S	F	T	.	.	.	.	P	T	L	S	G	H	L	S	V	S	Y	G	N	G	A	G	V	E	S
Query Conservation																																																											.	.	.	.
Alig confidence							.	.																												.																							.	.	.	.
Template Conservation							.	.																												.
Template Sequence		S	Y	G	V	P	.	.	G	L	T	F	X	V	R	Y	I	N	G	K	D	I	D	G	T	K	X	S	D	N	N	V	G	Y	K	.	N	Y	G	Y	G	E	D	G	K	H	H	E	T	N	L	E	A	K	Y	V	V	Q	S	G	P	A	K	D	L	S	F	R	I	R	Q	A	W	H	R	A	N	A	D	Q	G
Template Known Secondary structure		S	S	S		T	.	.	T																T	T			S	S		T	T	T	S	.	S	S				S	S																S	S	T	T	T	T														T	T	T	S
Template Predicted Secondary structure							.	.																												.
Template SS confidence
		326	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
					852	.	.	.	.	.	.	.	860	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	P	W	N	T	Q	A	G	V	V	W	T	F
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		E	G	D	Q	N	E	F	R	L	I	V	D	Y	P	L
Template Known Secondary structure		S		S	B
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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