Job Description P33924 Confidence 39.50% Date Thu Jan 5 11:52:48 GMT 2012 Rank 48 Aligned Residues 225 % Identity 11% Template c2o4vA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin p; PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane Resolution 1.94 Å

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		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		L	G	I	D	S	R	F	S	R	E	E	S	S	T	I	R	G	L	I	F	G	Y	S	H	S	D	I	G	F	D	R	G	G	K	G	N	I	D	S	Y	T	L	G	A	Y	A	G	W	E	H	Q	N	G	A	Y	V	D	G	V	V	K	V	D	R	F	A	N	T	I	H	G	K	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.																																						.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.
Template Sequence		T	G	I	Q	A	S	S	V	V	G	G	M	A	F	L	S	G	S	V	F	S	E	N	N	N	D	T	D	G	D	.	.	.	.	.	S	V	K	R	Y	N	L	R	G	V	F	A	P	L	H	E	P	G	N	V	V	H	L	G	L	Q	Y	A	Y	R	D	L	E	D	S	A	V	D	T	R	I	R	P	R	M
Template Known Secondary structure											T	T	T														B	T	T	S		.	.	.	.	.																	T	T															T	T	B						B				T
Template Predicted Secondary structure																																.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.						.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
																				702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	S	N	G	A	T	A	F	G	D	Y	N	S	N	G	A	G	A	H	V	E	S	G	F	R	W	V	D	G	L	W	S	V	R	P	Y	L	A	F	T	G	F	T	T	D	G	Q	D	Y	T	L	S	N	G	M	R	A	D	V	G	N	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.
Template Conservation																																																			.	.	.	.
Template Sequence		G	M	R	G	V	S	T	N	G	G	N	D	A	G	S	N	G	N	R	G	L	F	G	G	S	S	A	V	E	G	L	W	K	D	D	S	V	W	G	L	E	G	A	W	A	L	G	A	F	.	.	.	.	S	A	Q	A	E	Y	L	R	R	T	V	K	A	E	R	D	R	E	D	L	K	A	S	G	Y	Y	A
Template Known Secondary structure		T		G	G	G	S		S	S	B				G	G	G	B						B						T	T	S																T	T		.	.	.	.															T	T
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.					.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		764	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.							790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.
Query Sequence		R	I	L	R	A	E	A	G	T	A	V	S	Y	H	M	D	L	Q	N	G	T	T	L	E	P	W	.	.	.	.	.	.	L	K	A	A	V	R	Q	E	Y	A	D	S	N	Q	V	K	V	N	D	D	G	K	F	N	N	D	V	A	G	T	S	G	V	Y	Q	A	G	I	R	S	S	F	T	P	T	L	S	G
Query Conservation																												.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	A	Y	T	L	T	G	E	P	R	L	Y	K	L	D	G	A	K	F	D	T	I	K	P	E	N	K	E	I	G	A	W	E	L	F	Y	R	Y	D	S	I	K	V	E	D	D	N	I	V	V	D	S	A	T	R	E	V	G	D	A	K	G	K	T	H	T	L	G	V	N	W	Y	A	N	E	A	V	K	V
Template Known Secondary structure							T	T								T	T	T	T								S		T	T	T																	T	T			S			S	S	B		S	S																S	S	S
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		838	.	840	.	.	.	.	.	.	.	.							.	850	.	.	.	.	.	.	.	.	.	860	.	.	.
Predicted Secondary structure													.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.
Query Sequence		H	L	S	V	S	Y	G	N	G	A	G	.	.	.	.	.	.	V	E	S	P	W	N	T	Q	A	G	V	V	W	T	F
Query Conservation													.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	N	Y	V	K	A	K	T	D	K	I	S	N	A	N	G	D	D	S	G	D	G	L	V	M	R	L	Q	Y	V	F
Template Known Secondary structure												S	B			T	T
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions