Job Description P04079 Confidence 99.97% Date Thu Jan 5 10:58:10 GMT 2012 Rank 20 Aligned Residues 206 % Identity 23% Template c3q4gA_ PDB info PDB header:ligase Chain: A: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: structure of nad synthetase from vibrio cholerae Resolution 2.40 Å

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		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.											.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.																												.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	C	E	A	L	W	T	P	A	K	I	I	D	D	A	V	A	R	I	R	E	Q	V	.	.	.	G	D	D	K	V	I	L	G	L	S	G	G	V	D	S	S	V	T	A	M	L	L	H	R	A	I	G	.	.	.	.	.	.	.	.	.	.	K	N	L	T	C	V	F	V	D	N	G	L	L	R	L	N	E
Query Conservation																									.	.	.																												.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.																												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	L	P	S	I	D	P	Q	F	E	I	E	R	R	V	A	F	I	K	R	K	L	T	E	A	R	Y	K	S	L	V	L	G	I	S	G	G	V	D	S	T	T	C	G	R	L	A	Q	L	A	V	E	E	L	N	Q	Q	H	N	T	T	E	Y	Q	F	I	A	V	R	L	P	Y	G	E	Q	K	D	E	D
Template Known Secondary structure		T			S	S																						T										S	S																					T	T		S											S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.												.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		A	E	Q	V	L	D	M	F	G	D	H	F	G	L	N	I	V	H	V	P	A	E	D	R	F	L	S	A	L	A	G	E	N	.	.	.	.	.	.	.	.	.	.	.	D	P	E	A	K	R	K	I	I	G	R	V	F	V	E	V	F	D	E	E	A	L	K	L	E	.	D	V	K	W	L	A	Q	G	T	I
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence		.	.																																.	.	.	.	.	.	.	.	.	.	.																										.										.
Template Conservation		.	.																																																																														.
Template Sequence		.	.	E	A	Q	L	A	L	S	F	I	R	P	T	H	S	V	S	V	N	I	K	A	G	V	D	G	L	H	A	A	S	H	H	A	L	A	N	T	G	L	I	P	S	D	P	A	K	V	D	F	I	K	G	N	V	K	A	R	A	R	X	V	A	Q	Y	E	I	A	G	Y	V	G	G	L	V	L	G	T	.
Template Known Secondary structure		.	.												S																										T		S		S	S																												T				B			.
Template Predicted Secondary structure		.	.																																																																														.
Template SS confidence
				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		Y	P	D	V	I	E	S	A	A	S	A	T	G	K	A	H	V	I	K	S	H	H	N	V	G	G	L	P	K	E	M	K	M	G	L	V	E	P	L	K	E	L	F	K	D	E	V	R	K	I	G	L	E	L	G	L	P	Y	D	M	L	Y	R	H	P	F	P	G	P	G	L	G	V	R	V	L	G	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.																																											.	.	.
Template Conservation		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	D	H	S	A	E	N	I	T	G	F	Y	T	K	F	G	D	G	A	C	D	.	.	.	.	.	.	.	L	A	P	L	F	G	L	N	K	R	Q	V	R	L	L	A	K	T	L	G	A	P	E	Q	L	V	Y	K	T	P	T	A	D	L	N	L	T	Y	E	Q	I	D	D	F	L
Template Known Secondary structure		.	.	.	.	.	.	.	.									T		S		T	T	T	T	T			S	.	.	.	.	.	.	.	B		T	T	T	T													T	T							T				S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
										167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.								.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
					415	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	E	V	K	K	E	Y	C	D	L	L	R	R
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		E	G	K	A	V	P	A	E	V	S	Q	R	L	V	A
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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