Job Description P04079 Confidence 99.85% Date Thu Jan 5 10:58:10 GMT 2012 Rank 57 Aligned Residues 225 % Identity 17% Template c3n05B_ PDB info PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: crystal structure of nh3-dependent nad+ synthetase from streptomyces2 avermitilis Resolution 2.35 Å

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		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																		.	.	.																												.
Query SS confidence																		.	.	.																												.
Query Sequence		P	A	K	I	I	D	D	A	V	A	R	I	R	E	Q	V	.	.	.	G	D	D	K	V	I	L	G	L	S	G	G	V	D	S	S	V	T	A	M	L	L	H	R	A	I	G	.	K	N	L	T	C	V	F	V	D	N	G	L	L	R	L	N	E	A	E	Q	V	L	D	M	F	G	D	H	F	G	L	N	I
Query Conservation																		.	.	.																												.
Alig confidence																		.	.	.																												.																								.
Template Conservation																																																																								.
Template Sequence		D	E	E	V	Y	S	A	L	V	V	G	L	R	A	Y	V	A	K	N	G	F	R	S	V	L	I	G	L	S	G	G	I	D	S	A	L	V	A	A	I	A	C	D	A	L	G	A	Q	N	V	Y	G	V	S	M	P	S	K	Y	S	S	D	H	S	K	G	D	A	A	E	.	L	A	R	R	T	G	L	N	F
Template Known Secondary structure																			T	T	T										S	S																G	G	G									T	T												.				T	T	T
Template Predicted Secondary structure																																																																								.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		V	H	V	P	A	E	D	R	F	L	S	A	L	A	G	E	N	D	P	E	A	K	R	K	I	I	G	R	V	F	V	E	V	F	D	E	E	A	L	K	L	E	D	V	.	K	W	L	A	Q	G	T	I	Y	P	D	V	I	E	S	A	A	S	A	T	G	K	A	H	V	I	K	S	H	H	N	V	G	G	L
Query Conservation																																														.
Alig confidence																							.	.	.																					.								.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation																							.	.	.																													.	.	.	.	.	.	.	.	.																.	.	.	.
Template Sequence		R	T	V	S	I	E	P	M	F	D	A	Y	M	A	S	L	G	L	T	G	L	.	.	.	A	E	E	N	L	Q	S	R	L	R	G	T	T	L	M	A	I	S	N	Q	E	G	H	I	V	L	A	P	.	.	.	.	.	.	.	.	.	G	N	K	S	E	L	A	V	G	Y	S	S	V	G	A	.	.	.	.
Template Known Secondary structure						S											S						.	.	.																										B			.	.	.	.	.	.	.	.	.									T					S	S	.	.	.	.
Template Predicted Secondary structure																							.	.	.																													.	.	.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.				.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.										.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.															.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	K	E	M	K	M	G	L	V	E	P	L	K	E	L	F	K	D	E	V	R	K	I	G	L	E	L	G	L	P	Y	D	M	L	Y	R	H	P	F	P	G	P	G	L	G	V	R	V	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	K	K	E	Y	C	D	L	L	R	R	A	D	A	I
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																															.												.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																															.																																		.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	Y	G	P	I	K	D	V	Y	K	T	S	I	F	R	L	A	E	W	R	N	R	A	A	A	E	R	G	Q	T	P	.	P	I	P	E	A	S	I	T	K	P	D	Y	P	V	L	D	A	I	L	E	L	Y	V	D	R	D	T	G	A	D	A	I	V	.	.	.	.	A	A	G	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	B		T	T	T	T	S																		T	T	T				.	S	S						T															T	T	T									.	.	.	.			T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																															.																																		.	.	.	.
Template SS confidence
										452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.		.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.					.	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	E	E	L	R	K	A	D	L	Y	D	K	V	S	Q	A	F	T	V	F	L	P	V	R	S	V	G	V	M	G	D	G	R	K	Y	D
Query Conservation
Alig confidence																										.	.	.
Template Conservation																										.	.	.
Template Sequence		D	R	E	L	V	V	K	T	L	R	M	V	D	T	A	E	Y	K	R	R	Q	Y	P	P	.	.	.	G	T	K	I	S	A	K	G	F	G
Template Known Secondary structure																T						S	S			.	.	.						S	S	S	S	S
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.				.	560	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions