Job Description P04079 Confidence 99.67% Date Thu Jan 5 10:58:10 GMT 2012 Rank 70 Aligned Residues 236 % Identity 14% Template c3ilvA_ PDB info PDB header:ligase Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase; PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii Resolution 1.79 Å

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		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	I	I	D	D	A	V	A	R	I	R	E	Q	V	.	.	.	G	D	D	K	V	I	L	G	L	S	G	G	V	D	S	S	V	T	A	M	L	L	H	R	A	I	G	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	F	W	E	A	T	S	L	G	L	F	D	Y	X	R	K	S	R	S	K	G	F	V	L	S	L	S	G	G	A	D	S	S	A	C	A	I	X	V	A	E	X	I	R	K	G	L	K	E	L	G	L	T	A	F	L	Q	K	S	N	X	E	T	L	F	D	L	P	A	L	Q	H	L	P	F	E	E	Q	A
Template Known Secondary structure																			T	T			S							S	S																															T		G	G	G			S	S		S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
								255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.								.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure		.	.	.	.	.	.																																																	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	L	T	C	V	F	V	D	N	G	L	L	R	L	N	E	A	E	Q	V	L	D	M	F	G	D	H	F	G	L	N	I	V	H	V	P	A	E	D	R	F	L	S	A	L	A	G	E	N	.	.	.	.	.	.	.	D	P	E	A	K	R	K	I	I	G	R	V	F	V	E	V	F	D	E
Query Conservation		.	.	.	.	.	.																																																	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	I	T	A	V	F	L	T	T	A	Y	Q	S	T	R	N	S	G	D	E	T	Y	T	S	A	K	T	L	A	E	S	I	G	A	T	F	Y	N	W	S	V	D	E	E	I	E	Q	Y	K	A	T	I	E	N	V	I	E	R	P	L	T	W	E	K	D	D	I	T	L	Q	N	I	Q	A	R	G	R	A	P
Template Known Secondary structure																	T	T			S														T																							T	T	S				T	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		322	.	.	.	.	.	.		.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		E	A	L	K	L	E	D	.	V	K	W	L	A	Q	G	T	I	Y	P	D	V	I	E	S	A	A	S	A	T	G	K	A	H	V	I	K	S	H	H	N	V	G	G	L	P	K	E	M	K	M	G	L	V	E	P	L	K	E	L	F	K	D	E	V	R	K	I	G	L	E	L	G	L	P	Y	D	M	L	Y	R
Query Conservation									.
Alig confidence									.									.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Sequence		I	I	W	X	L	T	N	V	K	Q	A	L	L	I	T	T	.	.	.	.	.	.	.	.	.	S	N	R	S	E	G	D	V	G	Y	A	T	X	D	G	D	T	A	G	G	.	.	.	.	.	.	.	I	A	P	I	A	G	V	D	K	D	F	I	R	S	W	L	R	W	A	E	K	N	R	N	Q	H	G	L
Template Known Secondary structure											T				B			.	.	.	.	.	.	.	.	.								T	T		S		T	T	T	T	T		S	S	.	.	.	.	.	.	.	B	B	T	T	T	T	S																S			G	G	G
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.										.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.								.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
		401	.	.	.	.	.	.									.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.								.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Query Sequence		H	P	F	P	G	P	G	.	.	.	.	.	.	.	.	L	G	V	R	V	L	G	E	V	K	K	E	Y	C	D	L	L	R	R	A	.	.	.	.	.	.	.	D	A	I	F	I	E	E	L	R	K	A	D	L	Y	D	K	V	S	Q	A	F	T	V	F	L	P	V	R	S	V	G	V	M	G	D	G	R	K
Query Conservation									.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.													.	.							.	.	.	.	.	.	.																												.	.	.
Template Conservation																													.	.																																									.	.	.
Template Sequence		H	I	V	N	D	L	X	P	Y	D	V	L	A	R	I	E	R	K	A	I	K	E	R	L	S	P	V	.	.	Q	V	Y	T	A	L	L	T	E	G	P	Y	T	K	N	E	F	K	Y	W	V	K	K	F	F	R	L	W	S	I	N	Q	W	K	R	E	R	L	A	P	.	.	.	S	F	H	X	D	D	F	N
Template Known Secondary structure		S	S						T	T	T										T	T	S						.	.											S	S																			T					T	T				.	.	.	B				S	S
Template Predicted Secondary structure																													.	.																																									.	.	.
Template SS confidence
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.			.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.				.	.	.	.	.	.	.	580
		466	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		600	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions