Job Description P04079 Confidence 99.93% Date Thu Jan 5 10:58:10 GMT 2012 Rank 35 Aligned Residues 191 % Identity 20% Template c3fijD_ PDB info PDB header:structural genomics, unknown function Chain: D: PDB Molecule:lin1909 protein; PDBTitle: crystal structure of a uncharacterized protein lin1909 Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	H	R	I	L	I	L	D	F	G	S	Q	Y	T	Q	L	V	A	R	R	V	R	E	L	G	V	Y	C	E	L	W	A	W	D	V	T	E	A	Q	I	R	D	F	.	N	P	S	G	I	I	L	S	G	G	P	E	S	T	T	E	E	N	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																													.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.			.	.																														.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.			.	.
Template Sequence		K	P	V	I	G	I	T	.	.	.	G	Q	.	.	Q	R	Y	V	D	A	I	Q	K	V	G	G	F	P	I	A	L	P	I	D	D	P	S	T	A	V	Q	A	I	S	L	V	D	G	L	L	L	T	G	G	Q	D	I	T	P	Q	L	Y	L	E	E	P	S	Q	E	I	G	A	Y	F	P	P	R	D	S	Y
Template Known Secondary structure									.	.	.			.	.										T	T											G	G	G							T		S								S				G	G	G	G	T					T	T
Template Predicted Secondary structure									.	.	.			.	.
Template SS confidence
		4	.	.	.	.	.	10				.	.			.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
			69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120							.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.																																																					.	.	.	.	.	.
Query SS confidence		.																																																					.	.	.	.	.	.
Query Sequence		.	P	R	A	P	Q	Y	V	F	E	A	G	V	P	V	F	G	V	C	Y	G	M	Q	T	M	A	M	Q	L	G	G	H	V	E	A	S	N	E	R	E	F	G	Y	A	Q	V	E	V	V	N	D	S	A	.	.	.	.	.	.	L	V	R	G	I	E	D	A	L	T	A	D	G	K	P	L	L	D	V	W	M
Query Conservation		.																																																					.	.	.	.	.	.
Alig confidence		.																																																					.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	A	L	V	R	A	A	L	D	A	G	K	P	I	F	A	I	C	R	G	X	Q	L	V	N	V	A	L	G	G	T	L	Y	Q	D	I	S	Q	V	E	T	K	A	L	Q	H	L	Q	R	V	D	E	Q	L	G	S	H	T	I	D	I	E	P	T	S	E	L	A	K	H	H	P	N	K	K	L	V	N	S
Template Known Secondary structure													T							T										T	T					S	S	G	G	G	S	S	S						B			S		T	T	S									T	T	S	T	G	G	G	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																			.	.										.	.
Query SS confidence																																			.	.										.	.
Query Sequence		S	H	G	D	K	V	T	A	I	P	S	D	F	I	T	V	A	S	T	E	S	C	P	F	A	I	M	A	N	E	E	K	R	.	.	F	Y	G	V	Q	F	H	P	E	.	.	V	T	H	T	R	Q	G	M	R	M	L	E	R	F	V	R	D	I	C	Q
Query Conservation																																			.	.										.	.
Alig confidence																																			.	.										.	.																.
Template Conservation																																																															.
Template Sequence		L	H	H	Q	F	I	K	K	L	A	P	S	F	K	V	T	A	R	T	A	D	G	X	I	E	A	V	E	G	D	N	L	P	S	W	Y	L	G	V	Q	W	H	P	E	L	X	F	Q	T	D	P	E	S	E	Q	L	F	Q	A	L	V	.	D	E	S	K
Template Known Secondary structure		B		S					S			T	T								T	T									S	S		S	S						S	S		G	G	G	T	T	T	T													.
Template Predicted Secondary structure																																																															.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.		.	.	240	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions