 |
Job Description | P04079 | Confidence | 34.45% | Date | Thu Jan 5 10:58:10 GMT 2012 |
Rank | 313 | Aligned Residues | 73 |
% Identity | 22% | Template | c3e5bB_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:isocitrate lyase; |
PDBTitle: 2.4 a crystal structure of isocitrate lyase from brucella2 melitensis
|
Resolution | 2.37 Å |
|
 |
  |   |
219 | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | R | I | R | E | Q | V | G | D | D | K | V | I | L | G | L | S | G | G | V | D | S | S | V | T | A | M | L | L | H | R | A | I | G | K | N | L | T | C | V | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V | D | N | G | L | L | R | L | N | E | A | E | Q | V | L | D | M | F | G | D | H | F | G | L |
Query Conservation |   |
  |   |
|
|   |   |
|
|   |   |
|
|
|
|   |
|
|
|
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|
|   |   |
|   |   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |
|
|   |   |   |   |   |
|   |   |
| . | . |
|
|   |
|   |
|
|
|   |
|   |   |   |
| . |
|
|   |
|
|
|   |
|
|   |   |   |
|
|
|   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |   |
|
|   |   |   |
|   |   |
|   |   |
|   |   |   |
Template Sequence |   |
N | R | L | W | K | L | I | H | E | E | D | F | V | N | A | L | . |
. |
G | A | L | S | G | N | Q | A | M | Q | M | V | R | A | . |
G | L | K | A | I | Y | L | S | G | W | Q | V | A | A | D | A | N | T | A | S | A | M | Y | P | D | Q | S | L | Y | P | A | N | A | G | P | E | L | A | K | R | I | N | R | T | L | Q | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | S | S |
|  |  |  |  | . | . | B |
| S | S |  |  |  |  |  |  |  |  |  | T | . | T |
| S |
|  |  |  |
|  |  |  |  |  |  |  |
|
| T | T |
| S |
|
|
| S | S | S |
| S |
| T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
| . | . |
|
|
|
|  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
47 | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | |
|
. | . | . | . | . | . | . | 70 | . | . | . | . | . | . | |
. | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |
  |
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
284 | . | . | . | . | . | 290 | . | . | . | . |
Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |
|
|  |  |  |
Query SS confidence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | I | V | H | V | P | A | E | D | R | F |
Query Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|
|   |   |   |   |
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|
|   |
|
|
|   |
Template Sequence |   |
A | D | Q | I | E | T | A | E | G | K | G | L | S | V | D | T | W | F | A | P | I | V | A | D | A | E | A | G | F |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | T | S |
|
| S | S | S |
| S |
|
|
|  |  |  |  |
| T | T | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
124 | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|