Job Description P04079 Confidence 28.78% Date Thu Jan 5 10:58:10 GMT 2012 Rank 352 Aligned Residues 196 % Identity 18% Template c3daqB_ PDB info PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus Resolution 1.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.	230	.	.	.	.	.		.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																	.								.																		.
Query SS confidence																	.								.																		.
Query Sequence		I	D	D	A	V	A	R	I	R	E	Q	V	G	D	D	.	K	V	I	L	G	L	S	.	G	G	V	D	S	S	V	T	A	M	L	L	H	R	A	I	G	.	K	N	L	T	C	V	F	V	D	N	G	L	L	R	L	N	E	A	E	Q	V	L	D	M	F	G	D	H	F	G	L	N	I	V	H	V	P	A
Query Conservation																	.								.																		.
Alig confidence																	.								.																		.
Template Conservation
Template Sequence		K	E	L	I	L	K	T	V	I	D	L	V	D	K	R	V	P	V	I	A	G	T	G	T	N	D	T	E	K	S	I	Q	A	S	I	Q	A	K	A	L	G	A	D	A	I	M	L	I	T	P	Y	Y	N	K	T	N	Q	R	G	L	V	K	H	F	E	A	I	A	D	A	V	K	L	P	V	V	L	Y	N	V
Template Known Secondary structure														T	T	S	S									S																T		S									S	S																				S
Template Predicted Secondary structure
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		291	.	.	.																															.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	D	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	A	L	A	G	E	N	D	P	E	A	K	R	K	I	I	G	R	V	F	V	E	V	F	D	E	E	A	L	K	L	E	D	V	K	W	L	A	Q	G	T	I	Y	P	D
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.											.	.	.	.
Template Conservation																																																																.	.	.	.											.	.	.	.
Template Sequence		P	S	R	T	N	M	T	I	E	P	E	T	V	E	I	L	S	Q	H	P	Y	I	V	A	L	K	D	A	T	N	D	F	E	Y	L	E	E	V	K	K	R	I	D	T	N	S	F	A	L	Y	S	G	N	D	D	N	V	V	E	Y	Y	Q	.	.	.	.	R	G	G	Q	G	V	I	S	V	I	.	.	.	.
Template Known Secondary structure						S													T	S	T	T																			T	T	S		T	T	T	S					S		G	G	G							.	.	.	.	T	T							S	G	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.											.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.					200	.	.	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.						.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.
Query SS confidence																																													.	.	.	.	.
Query Sequence		V	I	E	S	A	A	S	A	T	G	K	A	H	V	I	K	S	H	H	N	V	G	G	L	P	K	E	M	K	M	G	L	V	E	P	L	K	E	L	F	K	D	E	.	.	.	.	.	V	R	K	I	G	L	E	L	G	L	P	Y	D	M	L	Y	R	H	P	F	P	G	P	G	L	G	V	R	V	L	G	E
Query Conservation																																													.	.	.	.	.
Alig confidence		.	.	.	.	.																																							.	.	.	.	.																.					.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																																											.					.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	A	N	V	I	P	K	E	F	Q	A	L	Y	D	A	Q	Q	S	G	L	D	I	Q	D	Q	F	K	P	I	G	T	L	L	S	A	L	S	V	D	I	N	P	I	P	I	K	A	L	T	S	Y	L	G	F	G	N	Y	E	L	.	R	L	P	L	.	.	.	.	.	.	.	.	.	.	V	S
Template Known Secondary structure		.	.	.	.	.	G	G	T														T	T																		T	T	S	S	T	T	T	T								T	T	S	S		S			.		T	T		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.																																																											.					.	.	.	.	.	.	.	.	.	.
Template SS confidence
							210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.											.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	K	E	Y	C	D	L	L	R	R	A	D	A	I	F	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	D	T	D	T	K	V	L	R	E	A	Y	D	T	F	K	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions