Job Description P04079 Confidence 26.96% Date Thu Jan 5 10:58:10 GMT 2012 Rank 383 Aligned Residues 75 % Identity 8% Template c2zkqb_ PDB info PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence		H	K	H	R	I	L	I	L	D	F	G	S	Q	Y	T	Q	L	V	A	R	R	V	R	E	L	G	V	Y	C	E	L	W	A	W	D	V	T	E	A	Q	I	R	D	F	.	.	.	N	P	S	G	I	I	L	S	G	G	P	E	S	T	T	E	E	N	S	P	R	A	P	Q	Y	V	F	E	A	G	V	P	V
Query Conservation																																														.	.	.
Alig confidence																																														.	.	.										.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.
Template Sequence		N	P	A	D	V	S	V	I	S	S	R	N	T	G	Q	R	A	V	L	K	F	A	A	A	T	G	A	T	P	I	A	G	R	F	T	P	G	F	T	N	Q	I	Q	A	A	F	R	E	P	R	L	L	V	V	T	D	.	.	.	.	.	.	P	R	A	D	H	Q	P	L	T	E	A	S	Y	V	N	L	P	T
Template Known Secondary structure			G	G	G							S																					S	S								T	T		S	S					S					S		.	.	.	.	.	.	T	T	T	T											T
Template Predicted Secondary structure																																																										.	.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.							.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		83	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	V	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	L	C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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