Job Description P04079 Confidence 100.00% Date Thu Jan 5 10:58:10 GMT 2012 Rank 2 Aligned Residues 504 % Identity 41% Template c2vxoB_ PDB info PDB header:ligase Chain: B: PDB Molecule:gmp synthase [glutamine-hydrolyzing]; PDBTitle: human gmp synthetase in complex with xmp Resolution 2.5 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	L	I	L	D	F	G	S	Q	Y	T	Q	L	V	A	R	R	V	R	E	L	G	V	Y	C	E	L	W	A	W	D	V	T	E	A	Q	I	R	D	F	N	P	S	G	I	I	L	S	G	G	P	E	S	T	T	E	E	N	S	P	R	A	P	Q	Y	V	F	E	A	G	V	P	V	F	G	V	C	Y	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	V	I	L	D	A	G	A	Q	Y	G	K	V	I	D	R	R	V	R	E	L	F	V	Q	S	E	I	F	P	L	E	T	P	A	F	A	I	K	E	Q	G	F	R	A	I	I	I	S	G	G	P	N	S	V	Y	A	E	D	A	P	W	F	D	P	A	I	F	T	I	G	K	P	V	L	G	I	C	Y	G
Template Known Secondary structure								S	S	S	S												T	T								T	T										T		S								S			T	T	S	T	T						G	G	G	G	T	S	S	S						T
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	T	M	A	M	Q	L	G	G	H	V	E	A	S	N	E	R	E	F	G	Y	A	Q	V	E	V	V	N	D	S	A	L	V	R	G	I	E	D	A	L	T	A	D	G	K	P	L	L	D	V	W	M	S	H	G	D	K	V	T	A	I	P	S	D	F	I	T	V	A	S	T	E	S	C	P	F	A	I	M
Query Conservation
Alig confidence																.	.	.																									.	.	.	.	.	.	.	.																											.
Template Conservation																.	.	.																									.	.	.	.	.	.	.	.																											.
Template Sequence		M	Q	M	M	N	K	V	F	G	G	T	V	H	K	.	.	.	K	S	D	G	V	F	N	I	S	V	D	N	T	C	S	L	F	R	G	L	Q	K	E	E	.	.	.	.	.	.	.	.	V	V	L	L	T	H	G	D	S	V	D	K	V	A	D	G	F	K	V	V	A	R	S	G	N	I	.	V	A	G	I
Template Known Secondary structure									T	T			B		S	.	.	.												T	T	S	G	G	G	T	T			S			.	.	.	.	.	.	.	.				B			S			B	S	S			T	T								T	T		.
Template Predicted Secondary structure																.	.	.																									.	.	.	.	.	.	.	.																											.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.									.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170		.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	E	E	K	R	F	Y	G	V	Q	F	H	P	E	V	T	H	T	R	Q	G	M	R	M	L	E	R	F	V	R	D	I	C	Q	C	E	A	L	W	T	P	A	K	I	I	D	D	A	V	A	R	I	R	E	Q	V	G	D	D	K	V	I	L	G	L	S	G	G	V	D	S	S	V	T	A	M	L	L	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	E	S	K	K	L	Y	G	A	Q	F	H	P	E	V	G	L	T	E	N	G	K	V	I	L	K	N	F	L	Y	D	I	A	G	C	S	G	T	F	T	V	Q	N	R	E	L	E	C	I	R	E	I	K	E	R	V	G	T	S	K	V	L	V	L	L	S	G	G	V	D	S	T	V	C	T	A	L	L	N
Template Known Secondary structure				T	T	T	T					S	B		T	T	S	T	T	S	T	T										T	T	T	T																								T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		249	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.											.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure						.																																													.	.	.	.	.	.	.	.	.	.
Query SS confidence						.																																													.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	I	G	.	K	N	L	T	C	V	F	V	D	N	G	L	L	R	L	N	E	A	E	Q	V	L	D	M	F	G	D	H	F	G	L	N	I	V	H	V	P	A	E	D	R	F	L	S	.	.	.	.	.	.	.	.	.	.	A	L	A	G	E	N	D	P	E	A	K	R	K	I	I	G	R	V	F	V	E
Query Conservation						.																																													.	.	.	.	.	.	.	.	.	.
Alig confidence						.																								.																					.	.	.	.	.	.	.	.	.	.
Template Conservation																														.
Template Sequence		R	A	L	N	Q	E	Q	V	I	A	V	H	I	D	N	G	F	M	R	K	R	E	S	Q	S	V	E	E	.	A	L	K	K	L	G	I	Q	V	K	V	I	N	A	A	H	S	F	Y	N	G	T	T	T	L	P	R	I	S	K	T	L	N	M	T	T	S	P	E	E	K	R	K	I	I	G	D	T	F	V	K
Template Known Secondary structure				S		T	T	T									S				T	T	T	T	T					.					T	T														T				B				B				G	G	G
Template Predicted Secondary structure																														.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.			.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure												.	.	.																					.																						.	.
Query SS confidence												.	.	.																					.																						.	.
Query Sequence		V	F	D	E	E	A	L	K	L	E	.	.	.	D	V	K	W	L	A	Q	G	T	I	Y	P	D	V	I	E	S	A	A	S	.	A	T	G	K	A	H	V	I	K	S	H	H	N	V	G	G	L	P	K	E	M	.	.	K	M	G	L	V	E	P	L	K	E	L	F	K	D	E	V	R	K	I	G	L	E	L
Query Conservation												.	.	.																					.																						.	.
Alig confidence												.	.	.																					.																						.	.
Template Conservation
Template Sequence		I	A	N	E	V	I	G	E	M	N	L	K	P	E	E	V	F	L	A	Q	G	T	L	R	P	D	L	I	E	S	A	S	L	V	A	S	G	K	A	E	L	I	K	T	H	H	N	D	T	E	L	I	R	K	L	R	E	E	G	K	V	I	E	P	L	K	D	F	H	K	D	E	V	R	I	L	G	R	E	L
Template Known Secondary structure										T	T			G	G	G								S	S			S	S									S				G	G	G	S			S	S										T	T					G	G	G	G	S												T
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.																										.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	P	Y	D	M	L	Y	R	H	P	F	P	G	P	G	L	G	V	R	V	L	G	E	V	K	K	E	Y	C	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	R	R	A	D	A	I	F	I	E	E	L	R	K	A	D	L	Y	D	K	V	S	Q
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	P	E	E	L	V	S	R	H	P	F	P	G	P	G	L	A	I	R	V	I	C	A	E	E	P	Y	I	C	K	D	F	P	E	T	N	N	I	L	K	I	V	A	D	F	S	A	S	V	K	K	P	H	T	L	L	Q	R	V	K	A	C	T	T	E	E	D	Q	E	K	L	M	Q	I	T	S	L	H	S
Template Known Secondary structure		T							T						T	T	G	G	G	G	G	B			B	S	S					T	T													T							S												S															S
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	F	T	V	F	L	P	V	R	S	V	G	V	M	G	D	G	R	K	Y	D	W	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	N	A	F	L	L	P	I	K	T	V	G	V	Q	G	D	C	R	S	Y	S	Y	V	C	G	I	S	S	K	D	E	P	D	W	E	S	L	I	F	L	A	R	L	I	P	R	M	C	H	N	V	N	R	V	V	Y	I	F	G	P	P	V	K	E	P	P	T	D	V	T	P	T	F	L	T	T	G	V	L	S
Template Known Secondary structure																T	T													S	S																			T	T									S	S			S	S			S	S				B		S
Template Predicted Secondary structure
Template SS confidence
		507	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
																																																		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	L	R	A	V	E	T	I	D	F	M	T	A	H	W	A	H	L	P	Y	D	F	L	G	R	V	S	N	R	I	I
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	R	Q	A	D	F	E	A	H	N	I	L	R	E	S	G	Y	A	G	K	I	S	Q	M	P	V	I	L	T	P	L	H	F	D	R	D	P	L	Q	K	Q	P	S	C	Q	R	S	V	V	I	R	T	F	I	T	S	D	F	M	T	G	I	P	A	T	P	G	N	E	I	P	V	E	V	V	L	K	M	V
Template Known Secondary structure																	T	T		G	G	G	S	S	B														S	T	T														B	B		S	S	S	S	S	B	B				B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		587	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.
		502	.	.				.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		N	E	V	.	.	.	N	G	I	S	R	V	V	Y	D	I	S	G	K	P	P	A	T	I	E	W	E
Query Conservation					.	.	.
Alig confidence					.	.	.
Template Conservation
Template Sequence		T	E	I	K	K	I	P	G	I	S	R	I	M	Y	D	L	T	S	K	P	P	G	T	T	E	W	E
Template Known Secondary structure						T	S	T	T											B	T	T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		667	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.