Job Description P04079 Confidence 26.34% Date Thu Jan 5 10:58:10 GMT 2012 Rank 390 Aligned Residues 91 % Identity 21% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		192	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.																																							.	.	.	.	230	.
Predicted Secondary structure														.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	M	L	E	R	F	V	R	D	I	C	Q	.	.	C	E	A	L	W	T	P	A	K	I	I	D	D	A	V	A	R	I	R	E	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	D	K	V	I
Query Conservation														.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.
Template Sequence		D	N	V	K	D	T	L	R	E	V	R	M	A	L	L	E	A	D	V	A	L	P	.	V	V	R	E	F	I	N	R	V	K	E	K	A	V	G	H	E	V	N	K	S	L	T	P	G	Q	E	F	V	K	I	V	R	N	E	L	V	A	A	M	G	E	E	N	Q	T	L	N	L	A	A	Q	P	P	A	V	V
Template Known Secondary structure																	T	S	S					.														T	T					S	S	S																		T	T		S						S		S	S	S	S
Template Predicted Secondary structure																								.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
				232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.				.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure		.	.																					.	.	.
Query SS confidence		.	.																					.	.	.
Query Sequence		.	.	L	G	L	S	G	G	V	D	S	S	V	T	A	M	L	L	H	R	A	I	.	.	.	G	K	N	L	T	C	V	F	V	D	N	G	L	L	R	L	N	E	A	E	Q	V	L	D	M	F	G	D	H	F	G	L	N	I	V
Query Conservation		.	.																					.	.	.
Alig confidence		.	.																					.	.	.																							.	.	.
Template Conservation																																																	.	.	.
Template Sequence		L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	Y	R	P	A	A	I	K	Q	L	E	T	.	.	.	L	A	E	Q	V	G	V	D	F	F
Template Known Secondary structure						S	S	S	S	S	S	T	T	T										T	S	S	S					B						S	S	S		S							.	.	.					T	T
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150				.	.	.	.	.	.	.	.	.	160

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions