Job Description P04079 Confidence 99.92% Date Thu Jan 5 10:58:10 GMT 2012 Rank 44 Aligned Residues 173 % Identity 20% Template c2issF_ PDB info PDB header:lyase, transferase Chain: F: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: structure of the plp synthase holoenzyme from thermotoga maritima Resolution 2.90 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.
Query Sequence		R	I	L	I	L	D	F	G	S	Q	Y	T	Q	L	V	A	R	R	V	R	E	L	G	V	Y	C	E	L	W	A	W	D	V	T	E	A	Q	I	R	D	F	N	P	S	G	I	I	L	S	G	G	P	E	S	T	T	E	E	.	.	.	.	.	N	S	P	R	A	P	Q	Y	V	F	E	A	G	V	P	V	F
Query Conservation																																																												.	.	.	.	.
Alig confidence											.																											.	.	.	.	.																		.	.	.	.	.
Template Conservation											.																											.	.	.	.	.
Template Sequence		K	I	G	V	L	G	V	Q	G	.	D	V	R	E	H	V	E	A	L	H	K	L	G	V	E	T	L	I	V	K	L	P	E	Q	L	D	.	.	.	.	.	M	V	D	G	L	I	L	P	G	G	E	S	T	T	M	I	R	I	L	K	E	M	D	M	D	E	K	L	V	E	R	I	N	N	G	L	P	V	F
Template Known Secondary structure								S	S	S	.												T	T								S	G	G	G	G	G	.	.	.	.	.	G		S						S	S												T	T											T	T
Template Predicted Secondary structure											.																											.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.						.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.
Query SS confidence																			.	.	.	.	.
Query Sequence		G	V	C	Y	G	M	Q	T	M	A	M	Q	L	G	G	H	V	.	.	.	.	.	E	A	S	N	E	R	E	F	G	Y	A	Q	V	E	V	V	N	D	S	A	L	V	R	G	I	E	D	A	L	T	A	D	G	K	P	L	L	D	V	W	M	S	H	G	D	K	V	T	A	I	P	S	D	F	I	T	V	A
Query Conservation																			.	.	.	.	.
Alig confidence																			.	.	.	.	.																														.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.
Template Sequence		A	T	C	A	G	V	I	L	L	A	K	R	I	K	Q	E	K	L	G	V	L	D	I	T	V	E	R	N	A	Y	G	R	Q	V	E	S	F	E	T	F	V	E	I	P	A	V	G	K	D	P	F	.	.	.	.	.	.	.	.	R	A	I	F	I	R	A	P	R	I	V	E	T	G	K	N	V	E	I	L	A
Template Known Secondary structure				T																								T	T	T	T		S	G	G	G									G	G	G		S	S			.	.	.	.	.	.	.	.					S	S									S	S
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.									.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	E	S	C	P	F	A	I	M	A	N	E	E	K	R	F	Y	G	V	Q	F	H	P	E	V	T	H	T	R	Q	G	M	R	M	L	E	R	F	V	R	D	I
Query Conservation
Alig confidence													.	.	.																		.	.	.
Template Conservation													.	.	.																		.	.	.
Template Sequence		T	Y	D	Y	D	P	V	L	V	K	E	.	.	.	G	N	I	L	A	C	T	F	H	P	E	L	T	D	D	L	R	.	.	.	L	H	R	Y	F	L	E	M	V
Template Known Secondary structure				T	T								.	.	.	T	T					S	S		G	G	G	S	S				.	.	.							T	T
Template Predicted Secondary structure													.	.	.																		.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.				.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions