Job Description P04079 Confidence 99.92% Date Thu Jan 5 10:58:10 GMT 2012 Rank 45 Aligned Residues 235 % Identity 17% Template c2e18B_ PDB info PDB header:ligase Chain: B: PDB Molecule:nh(3)-dependent nad(+) synthetase; PDBTitle: crystal structure of project ph0182 from pyrococcus horikoshii ot3 Resolution 2.10 Å

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		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		A	L	W	T	P	A	K	I	I	D	D	A	V	A	R	I	R	E	Q	V	G	D	D	K	V	I	L	G	L	S	G	G	V	D	S	S	V	T	A	M	L	L	H	R	A	I	G	.	K	N	L	T	C	V	F	V	D	N	G	L	L	R	L	N	E	A	E	Q	V	L	D	M	F	G	D	H	F	G	L	N
Query Conservation																																																	.
Alig confidence																					.																												.														.	.	.
Template Conservation																					.																																										.	.	.
Template Sequence		R	I	L	D	Y	D	K	V	I	E	R	I	L	E	F	I	R	E	K	.	G	N	N	G	V	V	I	G	I	S	G	G	V	D	S	A	T	V	A	Y	L	A	T	K	A	L	G	K	E	K	V	L	G	L	I	M	P	Y	F	E	N	.	.	.	K	D	V	E	D	A	K	L	V	A	E	K	L	G	I	G
Template Known Secondary structure																					.		T	T								S	S																G	G	G								S	S		S	.	.	.														T
Template Predicted Secondary structure																					.																																										.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		I	V	H	V	P	A	E	D	R	F	L	S	A	L	A	G	E	N	D	P	E	A	K	R	K	I	.	.	I	G	R	V	F	V	E	V	F	D	E	E	A	L	K	L	E	D	V	K	W	L	A	Q	G	T	I	Y	P	D	V	I	E	S	A	A	S	A	T	G	K	A	H	V	I	K	S	H	H	N	V	G
Query Conservation																												.	.
Alig confidence																												.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	K	V	I	N	I	K	P	I	V	D	S	F	V	E	N	L	E	L	N	L	D	R	K	G	L	G	N	I	M	S	R	T	R	M	I	M	L	Y	A	H	A	N	S	L	G	R	I	V	L	G	T	S	.	.	.	.	.	.	.	.	.	.	.	N	R	S	E	F	L	T	G	Y	F	T	K	W	G	D	G
Template Known Secondary structure																				S																											T								.	.	.	.	.	.	.	.	.	.	.								T		S		T	T	T	T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130												.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410									.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.
Query Sequence		G	L	P	K	E	M	K	M	G	L	V	E	P	L	K	E	L	F	K	D	E	V	R	K	I	G	L	E	L	G	L	P	Y	D	M	L	Y	R	H	P	F	P	G	P	G	L	G	V	.	.	.	.	.	.	.	.	R	V	L	G	E	V	K	K	E	Y	C	D	L	L	R	R	A	D	A	I	F	I	E	E
Query Conservation																																																		.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.																																.	.						.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.																																.	.
Template Sequence		A	S	D	.	.	.	.	.	.	.	Y	A	P	I	I	N	L	Y	K	T	E	V	W	E	I	A	K	R	I	G	V	P	E	R	I	V	K	K	K	P	S	.	.	A	G	L	W	E	G	Q	T	D	E	D	E	L	G	I	S	Y	N	L	L	D	E	I	L	W	R	M	I	D	L	K	I	G	K	E	E	I
Template Known Secondary structure			S	S	.	.	.	.	.	.	.	B		T	T	T	T	S												T	T								S				.	.			S	S	T	T								T	S														T	S
Template Predicted Secondary structure					.	.	.	.	.	.	.																																.	.
Template SS confidence
		147	.	.								150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450										.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.
Query Sequence		L	R	K	A	D	L	Y	D	K	V	S	Q	A	F	T	V	.	.	.	.	.	.	.	.	.	F	L	P	V	R	S	V	G	V	M	G	D	G	R	K	Y	D
Query Conservation																		.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.					.	.	.
Template Conservation																															.	.	.
Template Sequence		A	K	D	L	G	I	P	L	S	L	V	E	R	V	E	E	L	I	K	K	S	E	H	K	R	R	L	P	I	.	.	.	G	P	S	F	E	D	L	I	V	G
Template Known Secondary structure						T	S														T	T	G	G	G	S	S				.	.	.					G	G	G
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.				.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions