Job Description P04079 Confidence 99.95% Date Thu Jan 5 10:58:10 GMT 2012 Rank 24 Aligned Residues 188 % Identity 27% Template c2derA_ PDB info PDB header:transferase/rna Chain: A: PDB Molecule:trna-specific 2-thiouridylase mnma; PDBTitle: cocrystal structure of an rna sulfuration enzyme mnma and2 trna-glu in the initial trna binding state Resolution 3.10 Å

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		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.								.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																									.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.
Query Sequence		D	K	V	I	L	G	L	S	G	G	V	D	S	S	V	T	A	M	L	L	H	R	A	I	G	K	N	L	T	C	V	F	V	D	N	G	L	L	R	.	.	.	.	.	.	.	L	N	E	A	E	Q	V	L	D	M	F	G	D	H	F	G	L	N	I	V	H	V	P	A	E	D	R	F	L	S	A	L	A	G
Query Conservation																																									.	.	.	.	.	.	.
Alig confidence																									.																.	.	.	.	.	.	.
Template Conservation																									.
Template Sequence		K	K	V	I	V	G	M	S	G	G	V	D	S	S	V	S	A	W	L	L	Q	Q	Q	.	G	Y	Q	V	E	G	L	F	M	K	N	W	E	E	D	D	G	E	E	Y	C	T	A	A	A	D	L	A	D	A	Q	A	V	C	D	K	L	G	I	E	L	H	T	V	N	F	A	A	E	Y	W	D	N	V	F	E
Template Known Secondary structure										S		S	T	T									T	T	.																S																						T																T
Template Predicted Secondary structure																									.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		301	.	.	.	.	.	.	.							.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure										.	.	.	.	.	.										.	.																															.												.
Query SS confidence										.	.	.	.	.	.										.	.																															.												.
Query Sequence		E	N	D	P	E	A	K	R	.	.	.	.	.	.	K	I	I	G	R	V	F	V	E	.	.	V	F	D	E	E	A	L	K	L	E	D	V	K	W	L	A	Q	G	T	I	Y	P	D	V	I	E	S	A	A	S	.	A	T	G	K	A	H	V	I	K	S	H	.	H	N	V	G	G	L	P	K	E	M	K	M
Query Conservation										.	.	.	.	.	.										.	.																															.												.
Alig confidence										.	.	.	.	.	.										.	.																															.												.
Template Conservation
Template Sequence		L	F	L	A	E	Y	K	A	G	R	T	P	N	P	D	I	L	C	N	K	E	I	K	F	K	A	F	L	E	F	A	A	E	D	L	G	A	D	Y	I	A	T	G	H	Y	V	R	R	A	D	V	D	G	K	S	R	L	L	R	G	L	D	S	N	K	D	Q	S	Y	F	L	Y	T	L	S	H	E	Q	I	A
Template Known Secondary structure									T	T													T	T	T	T									T	T			S							S							T	T								S	S	T	T	T			G	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.			.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		G	L	V	E	P	L	K	E	L	F	K	D	E	V	R	K	I	G	L	E	L	G	L	P	.	.	Y	D	M	L	Y	R	H	P	F	P	G	P	G	L	G	V	R	V	L	G	E	V
Query Conservation																										.	.
Alig confidence																										.	.
Template Conservation
Template Sequence		Q	S	L	F	P	V	G	E	L	E	K	P	Q	V	R	K	I	A	E	D	L	G	L	V	K	F	R	E	F	L	G	R	Y	L	P	A	Q	P	G	K	I	I	T	V	D	G	D	E
Template Known Secondary structure							G	G	G	S												T	T										T	T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions