Job Description P04079 Confidence 99.88% Date Thu Jan 5 10:58:10 GMT 2012 Rank 52 Aligned Residues 183 % Identity 21% Template c2c5sA_ PDB info PDB header:rna-binding protein Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii; PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain Resolution 2.5 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.						.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence		D	D	K	V	I	L	G	L	S	G	G	V	D	S	S	V	T	A	M	L	L	H	R	A	I	G	K	N	L	T	C	V	F	V	D	N	G	L	L	R	L	N	E	A	E	Q	V	L	D	M	F	G	D	H	F	.	.	.	.	.	G	L	N	I	V	H	V	P	A	E	D	R	F	L	S	A	L	A	G	E
Query Conservation																																																									.	.	.	.	.
Alig confidence																										.																															.	.	.	.	.																				.
Template Conservation																										.																																																							.
Template Sequence		G	G	K	V	M	V	L	L	S	G	G	I	D	S	P	V	A	A	Y	L	T	M	K	R	.	G	V	S	V	E	A	V	H	F	H	S	P	P	F	T	S	E	R	A	K	Q	K	V	I	D	L	A	Q	E	L	T	K	Y	C	K	R	V	T	L	H	L	V	P	F	T	E	V	Q	K	T	I	N	K	E	.
Template Known Secondary structure		T									S	S	S												B	.	T											T	T	T	S																G	G	G	S	S																				.
Template Predicted Secondary structure																										.																																																							.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	P	E	A	K	R	K	I	I	G	R	V	F	V	E	V	F	D	E	E	A	L	K	L	E	D	V	K	W	L	A	Q	G	T	I	Y	P	D	V	I	E	S	A	A	S	A	T	G	K	A	H	V	I	K	S	H	H	N	V	G	G	L	P	K	E	M	K	M	G	L	V	E	P	L	K	E	L	F	K
Query Conservation
Alig confidence		.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	I	P	S	S	Y	S	M	T	V	M	R	R	M	M	M	R	I	T	E	R	I	A	E	E	R	N	A	L	A	I	T	T	G	E	S	L	G	Q	V	A	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	T	L	D	S	M	H	T	I	N	E	V	T	N	Y	P	V	I	R	P	L	I	T	M	D	K
Template Known Secondary structure		.	S		G	G	G																				T	T										S	S	S	T	T	S		.	.	.	.	.	.	.	.	.	.	.	.									G	G	G			S					T	T	T	T
Template Predicted Secondary structure		.																																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.													.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	V	R	K	I	G	L	E	L	G	L	P	Y	D	M	L	Y	R	H	P	F	P	G	P	G	L	G	V	R	V	L	G	E	V	K	K	E	Y	C	D	L	L	R	R	A
Query Conservation
Alig confidence																.	.						.
Template Conservation																.	.						.
Template Sequence		L	E	I	I	K	I	A	E	E	I	G	T	Y	D	.	.	I	S	I	R	P	.	Y	K	P	K	R	E	K	A	N	R	F	E	A	K	Y	D	F	T	P	L	I	D	E	A
Template Known Secondary structure											T	T				.	.			T	S		.													T	T	S
Template Predicted Secondary structure																.	.						.
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.			.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions