Job Description P04079 Confidence 99.89% Date Thu Jan 5 10:58:10 GMT 2012 Rank 49 Aligned Residues 184 % Identity 20% Template c2ad5B_ PDB info PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. Resolution 2.80 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.					50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		D	F	G	S	Q	Y	T	Q	L	V	A	R	R	V	R	E	L	G	V	Y	C	E	L	W	A	W	D	V	T	E	A	Q	I	R	D	F	.	.	.	.	N	P	S	G	I	I	L	S	G	G	P	E	S	T	T	E	E	N	S	P	R	A	P	Q	Y	V	F	E	A	G	V	P	V	F	G	V	C	Y	G	M
Query Conservation																																						.	.	.	.
Alig confidence																																						.	.	.	.
Template Conservation
Template Sequence		D	A	Y	K	S	V	I	E	A	L	K	H	G	G	L	K	N	R	V	S	V	N	I	K	L	I	D	S	Q	D	V	E	T	R	G	V	E	I	L	K	G	L	D	A	I	L	V	P	G	G	F	G	Y	R	G	V	E	G	M	I	T	T	A	R	F	A	R	E	N	N	I	P	Y	L	G	I	C	L	G	M
Template Known Secondary structure		G	G	G														T	T																		G	G	G	G	T	T		S										S	T	T														T	T							T
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.																																.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		Q	T	M	A	M	Q	L	G	G	H	V	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	E	R	E	F	G	Y	A	Q	V	E	V	V	N	D	S	A	L	V	R	G	I	E	.	D	A	L	T	A	D	G	K	P	L	L
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		Q	V	A	L	I	D	Y	A	R	H	V	A	N	M	E	N	A	N	S	T	E	F	V	P	D	C	K	Y	P	V	V	A	L	I	T	E	W	R	D	E	N	G	N	V	E	V	T	M	R	L	G	A	Q	Q	C	Q	L	V	D	D	S	L	V	R	Q	L	Y	N	A	P	T	I	V	E	R	H	R	H	R	Y
Template Known Secondary structure												T	T			T	T			B	T	T	T		T	T		S			S				T	T	T				S	S	S																	T	T								T	S	S
Template Predicted Secondary structure
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.		.	.	.	.	.	.	170	.	.	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.														.													.
Query SS confidence																												.														.													.
Query Sequence		D	V	W	M	S	H	G	D	K	V	T	A	I	P	S	D	F	I	T	V	A	S	T	E	S	C	.	P	F	A	I	M	A	N	E	E	K	R	F	Y	.	G	V	Q	F	H	P	E	V	T	H	T	R	.	Q	G	M	R	M	L	E	R	F	V	R
Query Conservation																												.														.													.
Alig confidence														.	.													.														.													.
Template Conservation														.	.
Template Sequence		E	V	N	N	M	L	L	K	Q	I	E	D	.	.	A	G	L	R	V	A	G	R	S	G	D	D	Q	L	V	E	I	I	E	V	P	N	H	P	W	F	V	A	C	Q	F	H	P	E	F	T	S	T	P	R	D	G	H	P	L	F	A	G	F	V	K
Template Known Secondary structure					G	G	G							.	.		T								T	T	T	T								T	T	S	S	S					S	S		G	G	G	G			T	T	T
Template Predicted Secondary structure														.	.
Template SS confidence
		472	.	.	.	.	.	.	.	480	.	.	.			.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions