Return to main results Retrieve Phyre Job Id

Job DescriptionP04079
Confidence82.02%DateThu Jan 5 10:58:10 GMT 2012
Rank133Aligned Residues254
% Identity19%Templatec1m6vE_
PDB info PDB header:ligaseChain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   228.230......... 240.........250.........260.........270.........280.........290........
Predicted Secondary structure 







.........














Query SS confidence 











. . . . . . . . .


























































Query Sequence  DKVILGLSGGVD. . . . . . . . . SSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDRFLSAL
Query Conservation   



 





.........


 
 

  


  
  
 

 
     
       

  


    

    
   
Alig confidence 











.........






























..........

















Template Conservation 








 
 



 


 

 







 

 



  

 

 

  .......... 

 


 

  
 
  
Template Sequence  KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPE. . . . . . . . . . MADATYIEPIHWEVVRKI
Template Known Secondary structure 



S
BTTB
TTT

S
SS
GGG
GG..........G
S




Template Predicted Secondary structure 




















..........





Template SS confidence 















































































   8.10.........20.........30.........40.........50......... 60.........70.......
 
   299300.........310.. .......320.........330.........340.........350.........360.........370...
Predicted Secondary structure 








.....





































Query SS confidence 













. . . . .




























































Query Sequence  AGENDPEAKRKIIG. . . . . RVFVEVFDEEALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLV
Query Conservation       

 
    
.....               
   

 

   
  
           


     

       

Alig confidence 













.....










































.......


.......
Template Conservation 
  
 





  

   
     
 
 


   

  

     
    

   
  
   .......


.......
Template Sequence  IEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKI. . . . . . . GLE. . . . . . . T
Template Known Secondary structure 

S
SSSTTTT

SS
S.......T

.......
Template Predicted Secondary structure 




















.......


.......
Template SS confidence 















































































   78.80.........90.........100.........110.........120.........130......... 140.. .
 
   374.....380 .........390.........400.........410.........420.........430.........440.........450..
Predicted Secondary structure 




.























Query SS confidence 






.







































































Query Sequence  EPLKELF. KDEVRKIGLELGLPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTVFL
Query Conservation   

  
 .
 


 


 



 


 
 







 

              
                  
      
Alig confidence 






.













..


















.































....
Template Conservation 
 
  
 
 


   
  



..




    

 

 

 
. 


      
   
    




 
 
 


....
Template Sequence  ARSGIAHTMEEALAVAADVGFP. . CIIRPSFTMGGSGGGIAYN. REEFEEICARGLDLSPTKELLIDESLIGWKEY. . . .
Template Known Secondary structure 
SSS
SS..TT

TTTT
SS.
TT



TTS....
Template Predicted Secondary structure 







..









.








....
Template SS confidence 















































































   144.....150.........160..... ....170.........180.... .....190.........200.........210......
 
   453......460.........470.........480....... .. 490.........500..... ....510.......
Predicted Secondary structure 





















.........

...

...




Query SS confidence 


































. . . . . . . . .

. . .















. . .











Query Sequence  PVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAH. . . . . . . . . LP. . . YDFLGRVSNRIINEVN. . . GISRVVYDISGK
Query Conservation      


 

 
 
            
  
     .........  ...   
      
     ... 
 

 
    
Alig confidence  ...







..





















.........

...















...











Template Conservation  ...




 
 .. 

 
 
   
  

 







 



 

 
   
 

 

 

 
 


  
  



 

  
Template Sequence  . . . EMEVVRDK. . NDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPK
Template Known Secondary structure  ...
T..T

SS
TTS
GGGS
S

S

T

STT
Template Predicted Secondary structure  ...
..





























Template SS confidence 















































































   217..220.... .....230.........240.........250.........260.........270.........280.........290.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions