Job Description P04079 Confidence 41.77% Date Thu Jan 5 10:58:10 GMT 2012 Rank 258 Aligned Residues 72 % Identity 24% Template c1j8yF_ PDB info PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant Resolution 2.00 Å

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		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230														.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Query Sequence		P	A	K	I	I	D	D	A	V	A	R	I	R	E	Q	V	G	D	D	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	G	L	S	G	G	V	D	S	S	V	T	A	M	L	L	H	R	A	I	.	.	G	K	N	L	T	C	V	F	V	D	N	G	L	L	R	L	N	E	A	E	Q	V	L
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.												.	.																							.
Template Conservation																																										.	.	.	.																																				.
Template Sequence		R	E	W	F	I	K	I	V	Y	D	E	L	S	N	L	F	G	G	D	K	E	P	K	V	I	P	D	K	I	P	Y	V	I	M	L	V	G	V	Q	G	.	.	.	.	T	T	A	G	K	L	A	Y	F	Y	K	K	K	G	F	K	V	G	L	V	G	A	D	V	Y	R	P	A	A	L	E	Q	L	Q	Q	.
Template Known Secondary structure																	T	T		S						S		S	S	S	S								S			.	.	.	.													T	T											S	S										.
Template Predicted Secondary structure																																										.	.	.	.																																				.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	F	G	D	H	F	G	L	N	I	V	H	V
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	L	G	Q	Q	I	G	V	P	V	Y	G	E
Template Known Secondary structure		.	.						T
Template Predicted Secondary structure		.	.
Template SS confidence
				148	.	150	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions