Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFL9
Confidence74.35%DateThu Jan 5 11:26:42 GMT 2012
Rank48Aligned Residues27
% Identity15%Templatec1i3qI_
PDB info PDB header:transcriptionChain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20.........30 .........
Predicted Secondary structure 













..





Query SS confidence 

















. .








Query Sequence  CSQCDMLVALPRLEHGQK. . AACPRCGTT
Query Conservation 
  

 
     
  
  ..
 




  
Alig confidence 

















..








Template Conservation 

 




              
  
   
Template Sequence  CRDCNNMLYPREDKENNRLLFECRTCSYV
Template Known Secondary structure 
SSS

BTTTTSSS

Template Predicted Secondary structure 



















Template SS confidence 




























   7..10.........20.........30.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions