Job Description P10908 Confidence 100.00% Date Thu Jan 5 11:32:27 GMT 2012 Rank 19 Aligned Residues 217 % Identity 16% Template c2f9rC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:sphingomyelinase d 1; PDBTitle: crystal structure of the inactive state of the smase i, a2 sphingomyelinase d from loxosceles laeta venom Resolution 1.85 Å

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		6	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure					.																																																				.	.
Query SS confidence					.																																																				.	.
Query Sequence		Y	P	R	.	I	V	A	H	R	G	G	G	K	L	A	P	E	N	T	L	A	S	I	D	V	G	A	K	Y	G	H	K	M	I	E	F	D	A	K	L	S	K	D	G	E	I	F	L	L	H	D	D	N	L	E	.	.	R	T	S	N	G	W	G	V	A	G	E	L	N	W	Q	D	L	L	R	V	D	A	G
Query Conservation					.																																																				.	.
Alig confidence					.						.	.	.	.	.	.	.																																								.	.
Template Conservation											.	.	.	.	.	.	.
Template Sequence		R	P	I	W	N	L	A	H	M	.	.	.	.	.	.	.	V	N	A	V	A	Q	I	P	D	F	L	D	L	G	A	N	A	L	E	A	D	V	T	F	K	G	S	V	P	T	Y	T	Y	H	G	T	P	C	D	F	G	R	D	C	I	R	W	E	Y	F	N	V	F	L	K	T	L	R	E	Y	T	T	P	G
Template Known Secondary structure									S		.	.	.	.	.	.	.			S	T	T									T		S										T	T									S	S			T	T	S		S																	T	S	T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.								.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																				.	.	140	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	W	Y	S	K	M	F	K	G	E	P	L	P	L	L	S	Q	V	A	E	R	C	R	E	H	G	M	M	A	N	I	E	I	K	P	T	T	G	T	G	P	L	T	G	K	M	V	A	L	A	A	R	E	L	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	M	T	P	P
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	D	G	F	I	L	F	V	L	D	L	K	T	G	S	L	S	N	D	Q	V	R	P	A	G	E	N	V	A	K	E	L	L	Q	N	Y	W	N	N	G	N	N	G	G	R	A	Y	V	V	L	S	L	P	D	I	G	H	Y
Template Known Secondary structure		S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T											T	T																					T	S	G	G	G	S	S											S		T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		78	.	80																			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.																						.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	S	S	F	E	I	D	A	L	E	A	A	Q	Q	A	A	P	E	L	P	R	G	L	L	L	D	E	W	R	D	D	W	R	E	L	T	A	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	C	V	S	I	H	L	N	H	K	L	L	N	K	A	R	V	M	Q
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	F	V	R	G	F	K	E	V	L	K	K	E	G	H	E	D	L	L	E	K	V	G	Y	D	F	S	G	P	Y	L	P	S	L	P	T	L	D	A	T	H	E	A	Y	K	K	A	G	V	D	G	H	I	W	L	S	D	G	L	T	N	F	S	P	L	G	D	M	A	R	L	K	E	A	I	K	S	R	D	S
Template Known Secondary structure														T	T		G	G	G	G	G	G										S	S	S															T			S		B						S			S																	T	S
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	D	A	G	L	R	I	L	V	Y	T	V	N	K	P	Q	R	A	A	E	L	L	R	W	G	V	D	C	I	C	T	D	A	I	D	V	I	G	P	N	F	T	A	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	G	F	I	N	K	I	Y	Y	W	S	V	D	K	V	S	T	T	K	A	A	L	D	V	G	V	D	G	I	M	T	N	Y	P	N	V	L	I	G	V	L	K	E	S
Template Known Secondary structure		T	T									T	T			S											T		S					S									T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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