Job Description P10908 Confidence 100.00% Date Thu Jan 5 11:32:27 GMT 2012 Rank 13 Aligned Residues 239 % Identity 20% Template c1ydyA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of periplasmic glycerophosphodiester2 phosphodiesterase from escherichia coli Resolution 1.70 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.													.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	P	R	I	V	A	H	R	G	G	G	K	L	A	P	E	N	T	L	A	S	I	D	V	G	A	K	Y	G	H	K	M	I	E	F	D	A	K	L	S	K	D	G	E	I	F	L	L	H	D	D	N	L	E	R	T	S	N	.	.	.	.	.	.	.	.	.	.	.	.	G	W	G	V	A	G	E	L	N	W
Query Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	I	V	I	A	H	R	G	A	S	G	Y	L	P	E	H	T	L	P	A	K	A	M	A	Y	A	Q	G	A	D	Y	L	E	Q	D	L	V	M	T	K	D	D	N	L	V	V	L	H	D	H	Y	L	D	R	V	T	D	V	A	D	R	F	P	D	R	A	R	K	D	G	R	Y	Y	A	I	D	F	T	L
Template Known Secondary structure								T	T	T	T	T	T	T	S	S	T	T											T	T		S										T	T	S						S	S	S	B		T	T	T	B	S					S	T	T				T	T	S			B	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.																.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.							.	.	.	110	.	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.														.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.														.	.	.	.
Query Sequence		Q	D	L	L	R	V	D	A	G	S	W	Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	M	F	K	G	E	P	L	P	L	L	S	Q	V	A	E	R	C	R	E	.	.	.	.	.	.	H	G	M	M	A	N	I	E	I	K	P	T	T	.	.	.	.	G	T	G	P	L	T	G	K	M
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.														.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.														.	.	.	.
Template Conservation
Template Sequence		D	E	I	K	S	L	K	F	T	E	G	F	D	I	E	N	G	K	K	V	Q	T	Y	P	G	R	F	P	M	G	K	S	D	F	R	V	H	T	F	E	E	E	I	E	F	V	Q	G	L	N	H	S	T	G	K	N	I	G	I	Y	P	E	I	K	A	P	W	F	H	H	Q	E	G	K	D	I	A	A	K	T
Template Known Secondary structure							S		B		S						T	T					S	S	T	T	S	S		T	T		S						B																S																		T	T
Template Predicted Secondary structure
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		129	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.						160	.	.	.	.	.	.	.	.	.	170	.	.	.	.																							.	.	.	.	.	180
Predicted Secondary structure													.																					.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.																					.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	L	A	A	R	E	L	W	A	G	.	M	T	P	P	L	L	S	S	F	E	I	D	A	L	E	A	A	Q	Q	A	.	.	.	.	.	A	P	E	L	P	R	G	L	L	L	D	E	W	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	R	E	L	T
Query Conservation													.																					.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																					.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	V	L	K	K	Y	G	Y	T	G	K	D	D	K	V	Y	L	Q	C	F	D	A	D	E	L	K	R	I	K	N	E	L	E	P	K	M	G	M	E	L	N	L	V	Q	L	I	A	Y	T	D	W	N	E	T	Q	Q	K	Q	P	D	G	S	W	V	N	Y	N	Y	D	W	M	F	K	P	G	A	M	K	Q
Template Known Secondary structure								T	T			S	T	T	S	S	B					S											T						T												G	G	G								T	T	S								G	G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.												.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.												.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	L	G	C	V	S	I	H	L	N	H	K	L	L	N	K	A	.	.	.	.	.	.	.	.	.	.	.	R	V	M	Q	L	K	D	A	G	L	R	I	L	V	Y	T	V	N	K	P	Q	R	A	A	E	.	.	.	.	.	.	.	.	.	.	.	L	L	R	W	G	V	D	C	I	C	T	D	A	I	D
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	E	Y	A	D	G	I	G	P	D	Y	H	M	L	I	E	E	T	S	Q	P	G	N	I	K	L	T	G	M	V	Q	D	A	Q	Q	N	K	L	V	V	H	P	Y	T	V	R	S	D	K	L	P	E	Y	T	P	D	V	N	Q	L	Y	D	A	L	Y	N	K	A	G	V	N	G	L	F	T	D	F	P	D
Template Known Secondary structure			T	T	T		S					B	G	G	G	T	B		T	T		B	T	T	B			B		S								T	T						B		B		T	T	S			T	T		S	S										T	T	S			S					S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		239	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	G	P	N	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	V	K	F	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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