|   |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | K | T | G | E | Q | L | T | T | S | H | V | F | S | G | F | G | C | E | G | G | N | T | S | P | S | L | T | W | S | G | V | P | E | G | T | K | S | F | A | V | T | V | Y | D | P | D | A | P | T | G | . |
. |
. |
. |
. |
S | G | W | W | H | W | T | V | V | N | I | P | A | T | V | T | Y | L | P | V | D | A | G | R |
Query Conservation |   |
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |
|
|   |
|   |
|   |
|
|   |
|   |
|   |   |   |
|   |
|
|
|
|   |
|
|
|   |   |
|
|
|
|
|   |   | . | . | . | . | . |   |   |   |   |
|
|
|
|   |
|
|
|   |   |   |   |   |
|   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
Template Conservation |   |
|   |   |
|   |   |
|   |   |   | . | . | . | . | . | . | . | . | . |   |
|   |   |   |
|   |
|   |   |   |   |   | . |   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|
|   |   |   |   |   |   | . | . | . | . | . | . | . |
Template Sequence |   |
V | Y | N | G | H | E | L | F | P | S | . |
. |
. |
. |
. |
. |
. |
. |
. |
A | V | T | S | T | P | R | V | E | V | H | G | G | . |
D | M | R | S | F | F | T | L | I | M | T | D | P | D | V | P | G | P | S | D | P | Y | L | R | E | H | L | H | W | I | V | T | D | I | P | G | T | T | D | S | . |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
|
| T | T |
| B |
|
| G | G | . | . | . | . | . | . | . | . | . | G | S | S | S |
|
|  |  |  |  |
|
|
| . |
| T | T |
|  |  |  |  |  |  |  |  |
| S |
| S |
| S | S | S |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  | T | T | S | B | G | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |
|  |  | . | . | . | . | . | . | . | . | . |  |  |
|
|
|
|  |  |  |  |  |
|
| . |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
35 | . | . | . | . | 40 | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | 50 | . | . | . | . | . | . | . | |
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
  |
  |   |
104 | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | D | G | T | K | L | P | T | G | A | V | Q | G | R | N | D | F | G | Y | A | G | F | G | G | A | C | P | P | K | G | D | K | P | H | H | Y | Q | F | K | V | W | A | L | K | T | E | K | I | P | V | D | S | N | S | S | G | A | L | V | G | Y | M |
Query Conservation |   |
  |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |
|   |   |   |
|   |
|
|   |
|
|   |
|   |   |   |
|
|
|   |
|   |
|
|
|
|
|   |   |   |
|   |
|   |   |   |   |
|   |   |   |
|   |   |
|
Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |   |   |
|   |   |
|   |
|   | . | . |
|
|   |
|
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |
|   |   |   |
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
S | F | G | K | E | V | V | S | Y | E | M | P | R | P | N | . |
. |
I | G | I | H | R | F | V | F | L | L | F | K | Q | K | K | R | G | V | V | C | R | D | G | F | N | T | R | K | F | T | Q | E |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | G | G | S |  |  |  |  |
|
|
|
|
|
|
|
| . | . | S | S |
|  |  |  |  |  |  |  |  |  |
| S | S |
|
|
|
|
| S | B | T |
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
98 | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | |
|
. | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . |
  |