Job Description P02925 Confidence 98.07% Date Thu Jan 5 10:57:39 GMT 2012 Rank 80 Aligned Residues 200 % Identity 9% Template d3ckma1 SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 1.35

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		28	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		T	I	A	L	V	V	S	T	L	N	N	.	.	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	G	Y	N	L	V	V	L	D	S	Q	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N	P	T	D	S	D	A	V	G	N	A	V	K	M	A	N	Q
Query Conservation													.	.
Alig confidence													.	.																																		.	.															.
Template Conservation																																																.	.															.
Template Sequence		Q	I	G	L	L	L	P	L	S	G	D	G	Q	I	L	G	T	T	I	Q	S	G	F	N	D	A	K	G	N	S	T	I	P	V	Q	V	F	D	T	S	X	N	S	V	Q	D	.	.	I	I	A	Q	A	K	Q	A	G	I	K	T	L	V	.	G	P	L	L	K	Q	N	L	D	V	I	L	A	D	P	A	Q
Template Known Secondary structure										S	S	T	T																T	T			S							T	T	T	S					.	.								T	T						.				S											G	G	G
Template Predicted Secondary structure																																																.	.															.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.			.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		A	N	I	P	V	I	T	L	D	R	Q	A	T	K	G	E	V	V	S	H	I	.	.	.	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q	Q	A	V	A	A	H	K	F	N	V	L
Query Conservation																							.	.	.
Alig confidence																							.	.	.																												.	.	.	.
Template Conservation																																																					.	.	.	.
Template Sequence		I	Q	G	X	D	V	L	A	L	N	A	T	P	N	S	R	A	I	P	Q	L	C	Y	Y	G	L	S	P	E	D	E	A	E	S	A	A	N	K	X	W	N	D	G	V	R	N	P	L	V	A	X	.	.	.	.	P	Q	N	D	L	G	Q	R	V	G	N	A	F	N	V	R	W	Q	Q	L	A	G	T	D	A
Template Known Secondary structure		G	T	T						S				T	T					T	T																						T	T			S						.	.	.	.		S	S																			S	S
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.					.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		A	S	Q	P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	.	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V	M	V	V	G
Query Conservation																																.
Alig confidence												.	.	.	.																	.
Template Conservation												.	.	.	.
Template Sequence		N	I	R	Y	Y	N	L	P	A	D	.	.	.	.	V	T	Y	F	V	Q	E	N	N	S	N	T	T	A	L	Y	A	V	A	S	P	T	E	L	A	E	X	K	G	Y	L	T	N	I	V	P	N	L	A	I	Y	A	S
Template Known Secondary structure							S	S	T	T		.	.	.	.								S		T	T																					T	T	T		T	T
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		411	.	.	.	.	.	.	.	.	420					.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions