Return to main results Retrieve Phyre Job Id

Job DescriptionP02925
Confidence97.98%DateThu Jan 5 10:57:39 GMT 2012
Rank83Aligned Residues206
% Identity16%Templated2liva_
SCOP infoPeriplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like
Resolution2.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30........ .40.........50.... .....60.........70.........80.........90......
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Query Sequence  TIALVVSTLNN. . PFFVSLKDGAQKEADK. . . . . . . . . LGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAV
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Template Sequence  KVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIAKYDDACDPKQAVAVANKVVNDGIK. YVIGHLCSSST
Template Known Secondary structure 
SSSSSTTTBTTB

TT
TT

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   4.....10.........20.........30.........40.........50.........60.........70. ........80..
 
   97..100.........110......... 120.........130.........140.........150.........160.........170.
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Query Sequence  GNAVKMANQANIPVITLDRQATK. . . . . GEVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQ
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Template Sequence  QPASDIYEDEGILMITPAATAPELTARGYQLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVH. . . DKQQYGEGLARAVQ
Template Known Secondary structure  TT
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GGGSSS

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GGGTT

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   83......90.........100.........110.........120.........130.........140..... ....150.........
 
   172.......180.........190.........200.........210.........220.........230........
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Query Sequence  QAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVG
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Template Sequence  DGLKKGNANVVFFDGITAGEKDFSTLVARLKKENID. FVYYGGYHPEMGQILRQARAAGLKTQFMGP
Template Known Secondary structure  TTT



TT



TT
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   160.........170.........180.........190..... ....200.........210.........220.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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