Job Description P02925 Confidence 94.45% Date Thu Jan 5 10:57:39 GMT 2012 Rank 104 Aligned Residues 220 % Identity 15% Template d1ewka_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.20

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		28	.	30	.	.	.	.																	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.									.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.					.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.					.	.
Query Sequence		T	I	A	L	V	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	.	.	.	.	.	.	.	.	G	Y	N	L	.	.	V	V	L	D	S	Q	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.					.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.					.	.
Template Conservation
Template Sequence		I	I	G	A	L	F	S	V	H	H	Q	P	P	A	E	K	V	P	E	R	K	C	G	E	I	R	E	Q	Y	G	I	Q	R	V	E	A	M	F	H	T	L	D	K	I	N	A	D	P	V	L	L	P	N	I	T	L	G	S	E	I	R	D	S	C	W	H	S	S	V	A	L	E	Q	S	I	E	F	I	R	K
Template Known Secondary structure									S	B					T	T	T	G	G	G	T					B		T	T	T	T																		S	S	S	S	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.							.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.
Query Sequence		G	T	K	I	L	L	I	N	P	T	D	S	D	A	V	G	N	A	V	K	M	A	N	Q	A	N	I	P	V	I	T	.	.	.	.	.	.	L	D	R	Q	A	T	K	G	E	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q
Query Conservation																																	.	.	.	.	.	.
Alig confidence					.																												.	.	.	.	.	.																																										.	.
Template Conservation					.																																																																											.	.
Template Sequence		P	I	A	.	G	V	I	G	P	G	S	S	S	V	A	I	Q	V	Q	N	L	L	Q	L	F	D	I	P	Q	I	A	Y	S	A	T	S	I	D	L	S	D	K	T	L	Y	K	Y	F	L	R	V	V	P	S	D	T	L	Q	A	R	A	M	L	D	I	V	K	R	Y	N	W	T	Y	V	S	A	V	H	.	.
Template Known Secondary structure					.						S	S												G	G	G	T						S	S				G	G	G	G		T	T	T		T	T				S	S																	T	T									.	.
Template Predicted Secondary structure					.																																																																											.	.
Template SS confidence
		155	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.
Predicted Secondary structure																													.	.																															.																			.
Query SS confidence																													.	.																															.																			.
Query Sequence		G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q	Q	A	V	A	A	H	K	F	N	V	L	.	.	A	S	Q	P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	.	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	.	K
Query Conservation																													.	.																															.																			.
Alig confidence		.	.																										.	.																															.																			.
Template Conservation		.	.
Template Sequence		.	.	T	E	G	N	Y	G	E	S	G	M	D	A	F	K	E	L	A	A	Q	E	G	L	C	I	A	H	S	D	K	I	Y	S	N	A	G	E	K	S	F	D	R	L	L	R	K	L	R	E	R	L	P	K	A	R	V	V	V	C	F	C	E	G	M	T	V	R	G	L	L	S	A	M	R	R	L	G	V	V
Template Known Secondary structure		.	.		S	S																		T											T	T															T	T	T	T	T																								T
Template Predicted Secondary structure		.	.
Template SS confidence
				232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	V	M	V	V	G	F	D	G	T	P	D	G	E	K	A	V	N	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	F	S	L	I	G	S	D	G	W	A	D	R	D	E	V	I	E	G	Y
Template Known Secondary structure		S								T	T	T	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions