Job Description P02925 Confidence 94.74% Date Thu Jan 5 10:57:39 GMT 2012 Rank 103 Aligned Residues 208 % Identity 12% Template d1dp4a_ SCOP info Periplasmic binding protein-like I Periplasmic binding protein-like I L-arabinose binding protein-like Resolution 2.00

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		28	.	30	.	.	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.									.	.	.	.	60	.	.	.	.	.	.								.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.																.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Query SS confidence															.	.	.																.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Query Sequence		T	I	A	L	V	V	S	T	L	N	N	P	F	.	.	.	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	.	.	.	.	.	.	.	.	G	Y	N	L	V	V	L	D	S	Q	N	.	.	.	.	.	.	.	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N
Query Conservation															.	.	.																.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Alig confidence															.	.	.																.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	A	V	V	L	P	L	T	N	T	S	Y	P	W	S	W	A	R	V	G	P	A	V	E	L	A	L	A	R	V	K	A	R	P	D	L	L	P	G	W	T	V	R	M	V	L	G	S	S	E	N	A	A	G	V	C	S	D	T	A	A	P	L	A	A	V	D	L	K	W	E	H	S	P	A	V	F	L	G
Template Known Secondary structure									S	S				S	T	T																		T		T	T	S	S	T	T											B		T	T	S	S	B		T	T																S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.							.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.
Query Sequence		P	T	D	S	D	A	V	G	N	A	V	K	M	A	N	Q	A	N	I	P	V	I	T	L	D	R	Q	A	T	K	G	E	V	.	.	.	.	.	.	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A
Query Conservation																																			.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.
Template Conservation
Template Sequence		P	G	C	V	Y	S	A	A	P	V	G	R	F	T	A	H	W	R	V	P	L	L	T	A	G	A	P	A	L	G	I	G	V	K	D	E	Y	A	L	T	T	R	T	G	P	S	H	V	K	L	G	D	F	V	T	A	L	H	R	R	L	G	W	E	H	Q	A	L	V	L	Y	A	D	R	L	G	D	D	R	P
Template Known Secondary structure				S															T						S					G	G	G	G		T	T	T	S	T	T					S																		T			S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		164	.	.	.			.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		R	E	R	G	.	.	E	G	F	Q	Q	A	V	A	A	H	K	F	N	V	L	A	S	Q	P	A	D	F	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V	M	V	V
Query Conservation						.	.
Alig confidence						.	.																																						.	.
Template Conservation																																													.	.
Template Sequence		C	F	F	I	V	E	G	L	Y	M	R	V	R	E	R	L	N	I	T	V	N	H	Q	E	F	V	E	G	D	P	D	H	Y	P	K	L	L	R	A	V	R	R	K	.	.	G	R	V	I	Y	I	C	S	S	P	D	A	F	R	N	L	M	L	L	A	L	N	A	G	L	T	G	E	D	Y	V
Template Known Secondary structure																												T	T		G	G	G												.	.		S						S															T	T			T	T	T
Template Predicted Secondary structure																																													.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.			.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions