Job Description P02925 Confidence 99.45% Date Thu Jan 5 10:57:39 GMT 2012 Rank 71 Aligned Residues 234 % Identity 12% Template c3s99A_ PDB info PDB header:lipid binding protein Chain: A: PDB Molecule:basic membrane lipoprotein; PDBTitle: crystal structure of a basic membrane lipoprotein from brucella2 melitensis, iodide soak Resolution 2.05 Å

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		28	.	30	.	.	.	.	.	.			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure											.	.																					.	.
Query SS confidence											.	.																					.	.
Query Sequence		T	I	A	L	V	V	S	T	L	.	.	N	N	P	F	F	V	S	L	K	D	G	A	Q	K	E	A	D	K	L	G	.	.	Y	N	L	V	V	L	D	S	Q	N	N	P	A	K	E	L	A	N	V	Q	D	L	T	V	R	G	T	K	I	L	L	I	N	P	T	D	S	D	A	V	G	N	A	V	K	M	A
Query Conservation											.	.																					.	.
Alig confidence											.	.																					.	.
Template Conservation
Template Sequence		K	V	G	F	I	Y	I	G	P	P	G	D	F	G	W	T	Y	Q	H	D	Q	A	R	K	E	L	V	E	A	L	G	D	K	V	E	T	T	F	L	E	N	V	A	E	G	A	D	A	E	R	S	I	K	R	I	A	R	A	G	N	K	L	I	F	T	T	S	F	G	Y	M	D	P	T	V	K	V	A	K	K
Template Known Secondary structure								S	S		G	G	G	S	S																	T	T	T								S			T	T													T	T		S						S	G	G	G									T	T
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		N	Q	A	N	I	P	V	I	T	L	D	R	Q	A	T	K	G	E	V	V	S	H	I	A	S	D	N	V	L	G	G	K	I	A	G	D	Y	I	A	K	K	A	G	E	G	A	K	V	I	E	L	Q	G	I	A	G	T	S	A	A	R	E	R	G	E	G	F	Q	Q	A	V	A	A	.	.	H	K	F	N	V
Query Conservation																																																																											.	.
Alig confidence			.															.																													.	.																											.	.
Template Conservation			.															.																													.	.
Template Sequence		F	.	P	D	V	K	F	E	H	A	T	G	Y	K	T	A	.	D	N	M	S	A	Y	N	A	R	F	Y	E	G	R	Y	V	Q	G	V	I	A	A	K	M	S	K	K	G	.	.	I	A	G	Y	I	G	S	V	P	V	P	E	V	V	Q	G	I	N	S	F	M	L	G	A	Q	S	V	N	P	D	F	R	V
Template Known Secondary structure			.	T	T	S						S					B	.	T	T																								S	S		.	.																										T	T		T	T
Template Predicted Secondary structure			.															.																													.	.
Template SS confidence
		102		.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		L	A	S	Q	P	A	D	F	.	D	R	I	K	G	L	N	V	M	Q	N	L	L	T	A	H	P	D	V	Q	A	V	F	A	Q	N	D	E	M	A	L	G	A	L	R	A	L	Q	T	A	G	K	S	D	V	M	V	V	G	F	D	G	T	P	D	G	E	K	A	V	N	D	G	K	L	A	A	T	I	A	Q
Query Conservation										.
Alig confidence										.																.	.													.	.											.	.	.												.	.	.
Template Conservation																										.	.													.	.											.	.	.												.	.	.
Template Sequence		K	V	I	W	V	N	S	W	F	D	P	G	K	E	A	D	A	A	K	A	L	I	D	Q	.	.	G	V	D	I	I	T	Q	H	T	D	S	T	.	.	A	A	I	Q	V	A	H	D	R	G	.	.	.	I	K	A	F	G	Q	A	S	D	M	I	.	.	.	K	F	A	P	D	T	Q	L	T	A	V	V	D
Template Known Secondary structure							S	S	S																T	.	.	T		S					S	S	S	S	S	.	.									T	T	.	.	.								S			G	.	.	.	G	G	S	T	T	T
Template Predicted Secondary structure																										.	.													.	.											.	.	.												.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.			.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	D	Q	I	G	A	K	G	V	E	T	A	D	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	W	G	P	Y	Y	I	D	R	A	K	A	V	L	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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